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Protein Overview: SPAC17H9.04c

General Information:
Name(s) found: SPAC17H9.04c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 604 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: zinc ion binding [IEA]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLPSPTMP LPESVGDLVV LHFETNLDDH GISIGRAPCE IHEICWVILD GKTLEKQHCE  60
   61 SCSIREDSSR HGICGSASSL TEAIFTLDNS IQERLNFQGK PFTFVVMNGR ELRVLLPKEA 120
  121 RDQGITLPSY MRHPRLFDLS SEYAKWQIRM GAVPPYTITL SHIFGKLDVD SLPPITESKA 180
  181 IELSPSDAPY ITKGLTQCWR LANATTLLLR KAEKDSRGHS LPSVLTQPIN CQADARSFYA 240
  241 ERSKIVHVAG LTNDVTQLEL ESWFTNHGVH PVALWTLKTP EPYKSTGTGF VLFASHEDAA 300
  301 DALAFNGYCL GDRMLEIIPS STKVLDKASD ILIPFPSSKN RPRPGDWNCP MCGFSNFQRR 360
  361 TSCFRCSFPG PTHVSAATGS NTFSPDFPYG NSYGNGSSHF IANYGGSVHH SNENTMQSDL 420
  421 QHQNGNNAVN HHHSSRSFGG NVPFRAGDWK CGSEGCGYHN FAKNVCCLRC GASRATAAVV 480
  481 ADHASGPVNG SYSHNSYSHI PPVMSTSPPN HSVYPYSQLS INSVTANHGQ NFGGQNGGNV 540
  541 SRFDDHGRFK EVSRPSVTTD QGDWLCECGF TNFRRRSNCL RCNAPHYSNM QIPASLPSDF 600
  601 NAYV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..326] PSI-BLAST 11.221849 No description for 2ghpA was found.
    2 View Details [327..439] PSI-BLAST 29.09691 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    3 View Details [440..604] FFAS03 2.28 ESCRT-II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.26550630643712 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.02897811404491 bayes_pls_golite062009
  • RNA binding
    		•  1.45577328897026 bayes_pls_golite062009
  • mRNA binding
    		•  0.274978159646657 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.26550630643712 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.02897811404491 bayes_pls_golite062009
  • RNA binding
    		•  1.45577328897026 bayes_pls_golite062009
  • mRNA binding
    		•  0.274978159646657 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle