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Protein Overview: SPBC3F6.04c

General Information:
Name(s) found: SPBC3F6.04c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • U3 snoRNP protein Nop14 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 827 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    ribonucleoprotein complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    ribosomal small subunit biogenesis [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNGSQLKN LKSSIRQANL GTRPNNKKSR TRSTESHEDR QAKVQKIQSD FNLFDRQFTK  60
   61 RKFDVGGRRV KGTEGKPGVS RGVGEELRRR TIGAELKKRN RSGAIIDRRF GENNPHLSVE 120
  121 EKMLERFSRE QQRRSKRELY NLDAEDVLTH GNRPLSDIDS FEEPGFGLDE GEELNDEVVR 180
  181 RMHFGGFEDS DAENEKEGEG AHKSKREVMS EIIAKSKHYK AERQAEKERY EDEREKLDEQ 240
  241 MEDLQSFLSD YKKASRKSGI KTQRPIISDG DARYDSFVRE MVFDKRAHPT ERTKTEEELA 300
  301 QIEADRLREL EDQRISRMEH YQEDSASEAG SIEDEQATDN VFGFGKGLEQ ENEEEWNGIN 360
  361 EEAEESEDEE SVNSDTSFVD DEQLKVEEQP LVGSAIKNEG SEKASLAYTY PCPTSHVEFV 420
  421 QLLKGLDYKD YPTVVSRIRT LHHVKLHPDN KSRLENFSVI LLQHILHLTR QPMISMELLE 480
  481 HLTEHLHSLA QQFPSALGIS FISVVEGMRK RLAKSYVYPE IKFPEISDLL FFNLTGSIFP 540
  541 TSDKKHIVVS PVMLTMAESL SQSPADSLSD VCKKLYIANL FLKFQSYSHR YVPEVITAVS 600
  601 QALYLLYPNF ISIVPGTFAL PDSLKEKQNL FAIQDISLDE PQRLSLYELE ELPTGLLQSS 660
  661 ILFITLNLIE MAIDIYFKEQ AFIEIFVPIM DMLQLYSLKK ELLSKRLSEK LLSTLQAVSD 720
  721 SIESAKANRK PLALQSHRPL GITSQVPKFE EGYSLDKSSH DIDPERAQLN KLRAQHRDAK 780
  781 KGAIRTLRKD ARFIARERRQ EQRAKDQAYN EKMRKLENRL QHFDPAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 5.522879 No description for 2i1jA was found.
    2 View Details [184..524] PSI-BLAST 16.69897 Heavy meromyosin subfragment
    3 View Details [525..754] deduced N/A No confident structure predictions are available.
    4 View Details [755..827] FFAS03 0.959 human APP core domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle