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Protein Overview: SPBC4F6.12

General Information:
Name(s) found: SPBC4F6.12 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • LIM domain [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 438 amino acids

    Gene Ontology:
    Cellular Component: actomyosin contractile ring [IDALink to PubMed articleLink to PubMed article]
    medial cortex [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    Biological Process: regulation of Rho protein signal transduction [IGILink to PubMed article]
    negative regulation of Rho protein signal transduction [IGILink to PubMed article]
    contractile ring contraction involved in cell cycle cytokinesis [IMPLink to PubMed article]
    cytokinesis, actomyosin contractile ring assembly [IGILink to PubMed articleLink to PubMed article][IMPLink to PubMed article]
    negative regulation of Rho GTPase activity [IMPLink to PubMed article]
    regulation of cytokinesis [IMPLink to PubMed article]
    cellular protein localization [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSPIPELPR FERRLTGPRA APSSPVSTNG SPLNNLVRSR LSDGALNFTG GRIATPLPQP  60
   61 SLKTPESPLS KRNPTIKQNR VRFDLPDDEL SRSNVSSPEK TLLTSASTST FDSLKKELLP 120
  121 ELPSLAYSDD DEFPSSPEEL NSHVNYPDVR NVYDCHTGLQ PLVDHDCIED RQKTFASKQL 180
  181 PTLPLQKSSK LSNRRPALHS FHSAPANSLY PLPTPTSQLP SNLSSNNLFQ SDSLKPSMVS 240
  241 SHTSTKPVLY RGNSEKSCHS CGGSLRAGRI ISASGKKLHP QCFKCDTCSQ NLEHVGFYYR 300
  301 EGKFYCHLDY HEQFSPRCKH CKTPIEDQAV HINNDWFHEN HHFCAGCSEV FNVNIPCIYR 360
  361 DDLYWCQTCY DNKYAVKCKK CRKPILGISV KGSDGEYHSQ CWTCGACNAL LGDEGYFMIE 420
  421 NTPICRPCKA ISVKFNLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] deduced N/A No confident structure predictions are available.
    2 View Details [197..353] PSI-BLAST 25.522879 No description for 2i13A was found.
    3 View Details [354..438] PSI-BLAST 10.69897 Ying-yang 1 (yy1, zinc finger domain)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle