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Protein Overview: jmj3

General Information:
Name(s) found: jmj3 / SPBC83.07 [Sanger Pombe]
Description(s) found:
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  • pir||T40696 hypothetical protein SPBC83.07 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582975|sp|O94691.1|JMJ3_SCHPO RecName: Full=Lid2 complex component jmj3; Short=Lid2C component jmj3 [NCBI NR]
  • gi|4455780|emb|CAB36869.1| Lid2 complex subunit Jmj3 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112431|ref|NP_595639.1| Lid2 complex subunit Jmj3 [Schizosaccharomyces pombe] [NCBI NR]
  • Lid2 complex subunit Jmj3 [Sanger Pombe]
  • Lid2 complex component jmj3 OS=Schizosaccharomyces pombe GN=jmj3 PE=2 SV=1 [Swiss-Prot]
  • TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN; JMJC DOMAIN; PUTATIVE DNA DAMAGE RESPONSE BY SIMILARITY: O94691; [pompepVF.fasta]
  • ZINC FINGER PROTEIN; POSSIBLE DNA DAMAGE RESPONSE BY SIMILARITY: O94691; [pompepV13]
  • Zinc finger protein [pompep4896]
  • |ecm5||Lid2 complex (PMID 12488447) [pompepnew.fasta]
  • Ecm5 protein (Spbc83.07 protein) [4896.FASTAC]
  • |ecm5|jmj3|transcription factor|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • Zinc finger protein; possible DNA damage response by similarity [Schizosaccharomyces pombe]gi|4455780|emb|CAB36869.1| SPBC83.07 [Schizosaccharomyces pombe]gi|7491739|pir||T40696 hypothetical protein SPBC83.07 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |jmj3||Lid2 complex |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O94691) Zinc finger protein [pompep4896_normal_reversed]
  • |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC83.07 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Lid2 complex component jmj3 (Lid2C component jmj3) [nr-271106-contam.fasta]
  • Lid2 protein [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |jmj3|kdm4|Lid2 complex subunit, histone demethylase H3-K36 specific Jmj3|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Lid2 complex component jmj3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=jmj3 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 752 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    Lid2 complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ICLink to PubMed article]
    negative regulation of transcription [ICLink to PubMed article]
    regulation of transcription, DNA-dependent [ICLink to PubMed article]
    histone demethylation [ISSLink to PubMed article]
    Molecular Function: histone demethylase activity (H3-K36 specific) [ISSLink to PubMed article]
    specific transcriptional repressor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNVKEKHA GKSDTSVSSL ECEIDYHIEG SDGIPVVEPK ISEFVDMESF IRRVERLGKK  60
   61 YGAIKVVRPS SVLNPWNEDT MKPSDVKMDL WLERMVRRKG EYFEIQSDID HGSAGPKKPT 120
  121 DMNVDDRFPS NAGSSNDFEN NVAKAIAYYW RSLTHDSLWY GYTNRPSIPF YFIPSISAAQ 180
  181 KDRVHLRSNT LINTWPNVGH LFAGKWKTTL PWRVESPELH AVQVHLGGSS LQWYVIPSAH 240
  241 SESFKKLAGK LAQDEHWRCS DFLLHQNILF PPSTLVQNGI VTYSTVLKQD ELLITFPGTH 300
  301 HSAFCLGDAV LRRFVFRSPR SASNYEFSNL RRLMVSESLY SSKSLWPHSH KPQRACSQKF 360
  361 LDEFYLHDLP ESNIHDSGNF HPIHSSVDNN SFSQRDFDSP NSINPPSPLM SNHESASTEH 420
  421 FNSTTTTEKE LSSLHVGEER KNRSLPLSLI WNSKAREEYI KKQKEENGDN IEFSHFDPLY 480
  481 TRPSSHPLHP PPILGLPVPA QFARGELFLG RILEDRVSEH MLLLECEKSD VVEVPYECIL 540
  541 TSSSAAGRRE SSYYNPALKA PNIVYDDGVP INWNEYSELP SLDRFVLPKL LPGKPIEFTP 600
  601 PISVEPTSIK TIAAEESSEP TSSVDVAPTP VEDVNVNLES ISNTNESVVD LSDPLVSKNG 660
  661 FEDVERSSVA DLEEDVLETR SSIFETSDID DRLTVIDRSQ SVVPSESEFS IAGANLTRRN 720
  721 AVDFSVSLDT YELYVSDEVE NVDDFSLFPS LE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..377] PSI-BLAST 108.0 No description for 2p5bA was found.
    2 View Details [378..474] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [475..558] deduced N/A No confident structure predictions are available.
    4 View Details [559..752] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle