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Protein Overview: SPCP1E11.11

General Information:
Name(s) found: SPCP1E11.11 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • Puf family RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 642 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIGKRKEST EVKKKDGSMN KRVKVAKLPK KVDSFSPKKK KNTTSSGSSE SDSMSQNDKK  60
   61 KDSSLNESED EDFAGFGESA SENDELESAE SEAENDEESS SQKSNSKESH AQRKKLQKER 120
  121 KAMKPFADTS LKAKSLWDKL RQKTSIKAEE RKTIIAELFD LIRTNVKQLV FKHDMSRVVQ 180
  181 TCVKFGSKQQ RETICAELAG SYVDLCKSPY GKYLAIKIFK YGTPKMKEVI LGEMYGNVVK 240
  241 MIRHREAAYV VEDAFREFTN LQQQRALICE FYGPEFQVFK DRTQDIHIDK LLIDHPEKRP 300
  301 SIMQNLWKTI EGSIAKGSIG FTMVHRAMLE FINHADSNEA KELLNLTKEL IYEFVHTRDG 360
  361 SQVAMKLFAL ANAKDRKVML KSLRPYLIET AKDSYGHLVV VAALDCTDDT IMTGKLLQAE 420
  421 FEGELLKLSA DKFARRILLY VLVGWEDARY FSKENRELLR SLDSLKAKTS KKDPIVRRNE 480
  481 LKATIGPLLI SLISKAAGDM IAESLASQVL VDALLYAPCE KEEAVDATLK AFDGNPEQDN 540
  541 HLIHQIHCSR ALKTLVQNGH WSGAEKQVVK AEDDLKVASK LIVIIKKYLV EWASGDGAFV 600
  601 VVAVLEALSD SEKQEFLKIL RKHKNQLNKS EFRGTKKLLE ML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] MSA 8.193996 View MSA. No confident structure predictions are available.
    2 View Details [112..486] PSI-BLAST 93.09691 Pumilio 1
    3 View Details [487..642] FFAS03 1.04 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.43298635785702 bayes_pls_golite062009
  • protein binding
    		•  1.50566694420704 bayes_pls_golite062009
  • RNA binding
    		•  1.20550543134698 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20255343083458 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.169755106399802 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.0330689772947346 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle