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Protein Overview: SPAC19A8.07c

General Information:
Name(s) found: SPAC19A8.07c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U3 snoRNP-associated protein Imp4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRAVRERR QFIYKRNQEL QEAKLNEKRR ALRKALEGNK ELNKDLQEDS QLQKDYKYDE  60
   61 SRATQEETET NLDDEYHRLG EREPKVLVTT SREPSSRLAQ FAKEVRLLIP NSYRLNRGNI 120
  121 VVGSLVEAAR ANDITDIVIL HEHRGIPDGL VISHLPYGPT LSFSLHNVVL RHDIPNTGTM 180
  181 SEAYPHLIFE NLTSKLGKRV KTALSALFPP DPKDTTPRVV TFANTDDYIS FRHHIYAKTG 240
  241 PKQIILSEAG PRFEMKLFEI TLGTVDMVDA DVEWKLKPYQ RHKRDVLAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] MSA 1.141987 View MSA. No confident structure predictions are available.
    2 View Details [64..174] PSI-BLAST 16.154902 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [175..289] FFAS03 1.74 Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.58650371779212 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity
    		•  2.71574082295198 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.73857064375258 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.358563180490135 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle