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Protein Overview: SPBC13G1.09

General Information:
Name(s) found: SPBC13G1.09 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • bystin-family protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [ISS]
    rRNA processing [ISS]
    Molecular Function: snoRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKAPKTKLH HAPLYKDIAE SSESGVLRQK PSKQKKSKES NTGNGFLDAK TSKKILQLAR  60
   61 EQKEELDEEE NGKPSQISAF ISNGHQKDTL ENPAIESSYE ESEHARNVSD SESITSQEEE 120
  121 EYEELEIDDA DRDLFDRFLP TVSGEEGDLT EEKTTSLSDL IMQKINEAEA RARGEYIPSA 180
  181 EEEENALPPL PPKVIEVYSK VGVLLSKYRS GKIPKAFKII PTLSNWEDIL YLTRPDMWTP 240
  241 HACYEATRIF ISNLKPVQAQ HFLTVIILER VRDDIRENKK LNYHLYMALK KALYKPSSWF 300
  301 KGFLFPLVQE NCTLREAAII GSILQKVSVP VLHSAAALLR LTEFDLSGAT SVFIRILLDK 360
  361 KYALPYKVLD SLVFYFMRWK SLERPLAVLE HQSMLVFAQR YKFDITPEQK DALLEVVRLK 420
  421 GHYSIGPEIR RELLNSASRG EEIPVEMEY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] MSA 5.142997 View MSA. No confident structure predictions are available.
    2 View Details [186..449] FFAS03 1.12 No description for 2ilrA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle