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Protein Overview: snt2

General Information:
Name(s) found: snt2 / SPAC3H1.12c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • Lid2 complex subunit Snt2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1131 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    Lid2 complex [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ICLink to PubMed article]
    regulation of transcription, DNA-dependent [ICLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    zinc ion binding [IEA]
    small conjugating protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVIEADSNL LFTAMFDLDK NTNIESNHVK IGNKNTTRRL IIKSSKNSVR IAYAPPEKHF  60
   61 VDVTDRFLLP ETETQNLKTR LGIFELEPLP PNGLVCCVLP NGELIQPNDF VLVNSPFPGE 120
  121 PFQIARIISF EKSRPCVSTN LYDSVRLNWY FRPRDIQRHL TDTRLLFASM HSDIYNIGSV 180
  181 QEKCTVKHRS QIENLDEYKS QAKSYYFDRL FDQNINKVFD VVPVTQVKNA PDDVLEDLFK 240
  241 NYDFIVTEYG KGRALLNEPS NCKVCKKWCA FDFSVQCADC KKYYHMDCVV PPLLKKPPHG 300
  301 FGWTCATCSF ATQRKKSTFQ KENANVDANH ATENNLEGQA TQKSVSILKG HNKALSNVSL 360
  361 QEDHGKRRNL KSLRSSRNLH QQSRKSLDEN KPNSFSNVSK LKRLPWNMRY LDLKSDLTVE 420
  421 KKSDIYPSRA RISISPMLPT SSEDNLHPLQ PLTTADEEMD LDLKSDERFK VDIPTFFERW 480
  481 PFLKDLPLKG YLFPLCEPNL QSAMLLVPIT YSDALLDDYL CSCWNLWKKL RLPVSAFVFL 540
  541 ELTITALYET KLSPAAAFEK LKSWMPGFGD PKNCTGKRVD EHKINSLVKE FGVSLQCFVE 600
  601 KLKFEYSLKE IFFSFLSWAS SPKGLNTFKK LSDSSLSTTT TDSHGLPTCC YDIGMYDLQK 660
  661 ILKLKKTPIC RWCHSKRSSE WFVAPPIEES SPKDKSKIVA LCQRCGYVWR YYGYPLQQAT 720
  721 PSDLRNCDFE PVKKRKADWD HLSNHDNEVK KENNRIRNAS SLMENPRVST KTFDNFTLTH 780
  781 DSTINVKADT VKRARQNNIK NKDDVNFSED RKKCCALCGI VGTEGLLVCF KCGTCVHERC 840
  841 YVCDDYAENE QMLVSASHLS GRTTRNSASP GIVSGKKSYA KKDQVLSWAC LSCRSNDNLG 900
  901 QNNDNHCVLC LQSASHSLMK KTVEGNWVHL ICASWTPDVY VPAEESEPVC GIAQLPPNRW 960
  961 EKKCEVCGNS FGVCVSSPNS GLTSHVTCAE KANWYLGFEF VKQDQSPFSM LSNLKSLSFF1020
 1021 GNVTEINTNK CMINSWTSLR PVLFGPSEQL PRNFLLRNDI VPNTNNSAWS EYIRNLYPKA1080
 1081 YIYLLQYTIA VCKPTIAPTN VACCCSKCNS TMSPFWWPGN ICQACHCLRV E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [90..230] PSI-BLAST 18.69897 Crystal structure of the proximal BAH domain of polybromo
    3 View Details [231..322] PSI-BLAST 5.522879 No description for 2ysmA was found.
    4 View Details [323..535] deduced N/A No confident structure predictions are available.
    5 View Details [536..634] PSI-BLAST 6.522879 Solution structure of the myb-like DNA-binding domain of mouse MTA3 protein
    6 View Details [635..796] FFAS03 3.03 Erythroid transcription factor GATA-1
    7 View Details [797..874] PSI-BLAST 3.522879 No description for 2puyA was found.
    8 View Details [875..1019] MSA 13.431997 View MSA. No confident structure predictions are available.
    9 View Details [1020..1131] MSA 1.205995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle