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Protein Overview: vps45

General Information:
Name(s) found: vps45 / SPAC2G11.03c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • vacuolar sorting protein Vps 45 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: vesicle fusion [ISSLink to PubMed article]
    vesicle docking during exocytosis [ISSLink to PubMed article]
    Molecular Function: SNARE binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVSASQSY FKRIFQEVSD LKILLLEEDT TKIVSSCITQ SNLLEQQIYL TVLLGNKREK  60
   61 LRHLKCVAFL RPTPTTLRLL CEELRDPKYA EYHLYFTNVI PKSFLERLAE SDDFEAVKSI 120
  121 QEFFLDYLVV NNDLASFNIP HIIEDSPDNW QDGAFHRTHQ GIISLLLSLK KKPVIRYDNN 180
  181 SLLCLKLAEE VSYTIQHESQ LFNFRKPDTA PILLLLDRKN DPITPLLTQW TYQAMVHELF 240
  241 GIDNGRVSFS NSTSDNEKST EIVLNPTLDP FYKETRFDNF GDLGVKIKDY VSHLQTKSTK 300
  301 KASEIESIAD MKQFLEAYPE YRRLSGNVSK HVSLVSEISQ VVQRENLLEV GEVEQSLVCN 360
  361 EPQSTDFNDI QRLLFSNISE NTKLRLAALY SLRFERIDPA KVSALQQMLI AGGVNPLKVS 420
  421 VIPTLLHVAG YSFRQGDVFP PSNLFSRARS GLKGLRGVEN VYIQHNPFLK SILLDLIQGR 480
  481 LKETTHPFLN SETRAQTSNE KPQDIIVVIV GGATYEEAHF VSEFNATQPG VRIILAGTTI 540
  541 LNSTAYIDDI MYMSTRIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..558] PSI-BLAST 155.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  4.56428593085019 bayes_pls_golite062009
  • syntaxin binding
    		•  3.46044132736061 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • protein binding
    		•  2.77285532000616 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle