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Protein Overview: swi10

General Information:
Name(s) found: swi10 / SPBC4F6.15c [Sanger Pombe]
Description(s) found:
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  • pir||S30292 mating-type switching protein SWI10 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|549012|sp|Q06182.1|SWI10_SCHPO RecName: Full=Mating-type switching protein swi10 [NCBI NR]
  • gi|5111|emb|CAA43928.1| SWI10 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|3560148|emb|CAA20735.1| DNA repair endonuclease Swi10 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112907|ref|NP_596115.1| DNA repair endonuclease [Schizosaccharomyces pombe] [NCBI NR]
  • DNA repair endonuclease [Sanger Pombe]
  • Mating-type switching protein swi10 OS=Schizosaccharomyces pombe GN=swi10 PE=2 SV=1 [Swiss-Prot]
  • (Q06182) Mating-type switching protein swi10 [Swiss-Prot]
  • MATING-TYPE SWITCHING PROTEIN; MISMATCH REPAIR; STRAND INCISION; SIMILAR TO S. CEREVISIAE RAD10: Q06182; [pompepVF.fasta]
  • MATING-TYPE SWITCHING PROTEIN; MISMATCH REPAIR; STRAND INCISION: Q06182; [pompepV13]
  • Mating-type switching protein swi10 [pompep4896]
  • |swi10||putative endonuclease complex subunit [pompepnew.fasta]
  • |swi10||endonuclease complex subunit (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • |swi10|rad23|DNA repair endonuclease|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • mating-type switching protein swi10. [Schizosaccharomyces pombe]gi|5111|emb|CAA43928.1| SWI10 [Schizosaccharomyces pombe]gi|3560148|emb|CAA20735.1| swi10 [Schizosaccharomyces pombe]gi|549012|sp|Q06182|SW10_SCHPO Mating-type switching protein swi10gi|6 [nrdb_11152004_Chlamydomonas]
  • |swi10|rad23|DNA repair endonuclease Swi10|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC4F6.15c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SWI10 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPBC4F6.15c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleotide-excision repair complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: nucleotide-excision repair, DNA incision, 5'-to lesion [IGILink to PubMed article]
    gene conversion at mating-type locus [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    protein heterodimerization activity [IPILink to PubMed article]
    polyubiquitin binding [IDALink to PubMed article]
    damaged DNA binding [IEA]
    single-stranded DNA specific endodeoxyribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIDDEEFE QLAVSALEEV EKKAGFAQQP TPQKVSRVTA HSILVNPRQK GNPLLPHVRN  60
   61 VPWEYTDIVP DFVMGTGICS LFLSLKYHHL HPEYIYSRIS KLGKSYNLRI LLILVDVENH 120
  121 QASIQELVKT SIVNQYTLIL AWSSEEAARY LETYKAYENM SPALIMEKPS TDYLSQVQSF 180
  181 LTSIRGINKS DSLSLLSKFG SLERALVASR DELEQLEGWG PTKVNRFLEA VQQPFMSHST 240
  241 IKRPEAINLK QT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] PSI-BLAST 29.69897 Crystal Structure of the Central Domain of Human ERCC1
    2 View Details [162..252] PSI-BLAST 17.69897 Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle