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Protein Overview: srp2

General Information:
Name(s) found: srp2 / SPAC16.02c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • mRNA export factor Srp2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 365 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: mRNA export from nucleus [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    poly(A) RNA binding [ISSLink to PubMed article]
    protein heterodimerization activity [IPILink to PubMed article]
    mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETRLFVGR IPPQATREDM MDFFKGYGQI LDCKLMNGFG FVEVEDARDA RDIVNDFQGK  60
   61 EFMGSRIVVE PARGERRRRE NFRESAASKY PRPRRTGFRL IVENLSEDVS WQDLKDVMRK 120
  121 AGEPTFTDAH RENPGAGVVE FSTEEDMRNA LTSLNGEVIK GQAVTLREDP DAANEPLPEV 180
  181 PSRFRSRSPP ARRRYRDDYR RGGDYRRDAY RPGRDDERRY APRGEYRRNN RDEYRRGGRD 240
  241 EYRRNSRSDY RRPHDDEYRR PRGDEYRPGR DEYRRSRDDG RPSHDDEYRR DAYSRSPSPR 300
  301 RDREENRSPA YEGSKSYSAA PEASMESSAP TESYDKPAAS EEQQPLQNHS DVGNGSAEGQ 360
  361 VAAEW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..175] PSI-BLAST 24.69897 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [176..365] MSA 1.524997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  4.43921816934576 bayes_pls_golite062009
  • binding
    		•  3.19379300171257 bayes_pls_golite062009
  • mRNA binding
    		•  3.1794312979994 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34356093608328 bayes_pls_golite062009
  • protein binding
    		•  1.52056358240529 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.851308060174055 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.414871108842203 bayes_pls_golite062009
  • poly-purine tract binding
    		•  0.15653271757169 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.11509546367801 bayes_pls_golite062009
  • poly(A) RNA binding
    		•  0.0459878286238641 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle