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Protein Overview: sce3

General Information:
Name(s) found: sce3 / SPBC18H10.04c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • translation initiation factor eIF4B [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 388 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    ribosome [ISS]
    Biological Process: barrier septum formation [IGILink to PubMed article]
    translational initiation [ISS]
    Molecular Function: translation initiation factor activity [ISS]
    RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPKKSTKMS LNAFLGDESF GSTNWADDID DLPALPQDRT TSTYRATPSS ADAGYNAPSS  60
   61 TFESVRSPPE SRREGGMGSG YQRDAIPIPS EPPFTAHVGN LSFDLTENDL GDFFGEGVTS 120
  121 IRLVIDPLTE RSRGFGYVEF ETADTLSAAL ALSGEDLMGR PVRITVAEPR RSFAREERST 180
  181 GDWVRRGPLP PAEPAESPFG KRRTNSGRFR DPARDPSDRV REEPREWVRR GPLPPRESSE 240
  241 RPRLNLKPRS SSNVNTEATP SATTTTSSKP KRDPFGGAKP VDNTSVLQRV EEKLAKRTQS 300
  301 FRREDNANRE RSTSRKPSAD KAEKTDKTDA IAEKVSDIRL GDGEKKSSET DSEVAATKTP 360
  361 ATEDAPATNA GEAEEEEGWT KIGKGRKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] PSI-BLAST 33.69897 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [189..388] FFAS03 1.13 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.85623936961615 bayes_pls_golite062009
  • RNA binding
    		•  2.05010436328789 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.47284776517711 bayes_pls_golite062009
  • protein binding
    		•  1.32954276279597 bayes_pls_golite062009
  • mRNA binding
    		•  0.487879052146416 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle