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Protein Overview: rpc40

General Information:
Name(s) found: rpc40 / SPBC1289.07c [Sanger Pombe]
Description(s) found:
Found 25 descriptions.
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  • DNA-directed RNA polymerase I and III subunit Rpc40 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA-directed RNA polymerase I complex [IGILink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    DNA-directed RNA polymerase III complex [IGILink to PubMed article]
    Biological Process: transcription from RNA polymerase III promoter [IGILink to PubMed article]
    transcription from RNA polymerase I promoter [IGILink to PubMed article]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [IGILink to PubMed article]
    protein dimerization activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVDRSRTE ISVLSDRVTD VGSVDFPGYY FDEDNIWDLD KFKKNLKVSI TSLDQETMVF  60
   61 EISGIDASIA NAFRRILIAE IPTLAFEFVY IINNTSIIQD EVLSHRIGLV PISADPDMFK 120
  121 WFQHPLPGQE ATHTDYDTVV FSLNKKCEFN KNAATDEKDP KRLYVNSEVY SGDLIWKPQG 180
  181 RQEERFADNP IRVVNPDIVV AKLRPGQEID LEAHAILGIG QDHAKFSPVA TASYRLLPTI 240
  241 HILSPIEGED AVKFQKCFPK GVIELEEGPD GKKQARVADV RKDTVSRECL RHPEFADKVQ 300
  301 LGRVRDHYLF SVESTGIMKP DVLFIKSIAV LKSKCLAVKS SLQNISSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..348] PSI-BLAST 83.30103 RPB3


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle