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Protein Overview: rpa49

General Information:
Name(s) found: rpa49 / SPAC2F3.03c [Sanger Pombe]
Description(s) found:
Found 22 descriptions.
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  • DNA-directed RNA polymerase I complex [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA-directed RNA polymerase I complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: transcription from RNA polymerase I promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDELKGKK RKYRDSHSGD EKSVKILPLS ESSLPPLVTT ISGFYPPENT RFQLLKKSNQ  60
   61 SNRDASLIGR TERVQFEAKN QSTATVEANY CLAVADKTGR VKKIVPAKYL NTFERNILAL 120
  121 QEKDKFLKKK HGTVSGTVME QRANLGLAFG TRKSQKAIME ESANRVKAET LGDVKDQLVS 180
  181 NVQKATEALP TQEDIAAAQA QDRPIPPVNV GAESIEDAYK LEDIIPKEEF SAIYIKPLLE 240
  241 NPDERNWAKL LPYRHSLFIN ERFQRLLSIE EVDQKRARIL YYISLLQAFL FSRRSVGNRE 300
  301 TLRKKLADPP EILIDGLIKR FTQTTGIGSV QVSSREVDKI ICYILVLCLI VDNYSTDVLT 360
  361 LANDLNVKTM KANELFRTVG CRIMAYTETQ RMALGLNKTD AKNHKRAVLK IPLEFPKPRR 420
  421 GRARN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] MSA 1.032991 View MSA. No confident structure predictions are available.
    2 View Details [86..149] MSA 1.037994 View MSA. No confident structure predictions are available.
    3 View Details [150..271] MSA 1.040996 View MSA. No confident structure predictions are available.
    4 View Details [272..425] MSA 1.040993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle