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Protein Overview: rpl402

General Information:
Name(s) found: rpl402 / SPBP8B7.03c [Sanger Pombe]
Description(s) found:
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  • pir||T40797 60s ribosomal protein l2 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3810827|emb|CAA21788.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19858781|sp|P35679.2|RL4A_SCHPO RecName: Full=60S ribosomal protein L4-A; AltName: Full=L2 [NCBI NR]
  • gi|19113302|ref|NP_596510.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe] [NCBI NR]
  • 60S ribosomal protein L2 [Sanger Pombe]
  • 60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2 [Swiss-Prot]
  • 60S RIBOSOMAL PROTEIN L2: O94253;P35679; [pompepVF.fasta]
  • 60S ribosomal protein L4-A (L2) [pompep4896]
  • |rpl402|rpl4-2, rpl4|60S ribosomal protein L2 [pompepnew.fasta]
  • |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • 60s ribosomal protein l2 [Schizosaccharomyces pombe]gi|3810827|emb|CAA21788.1| SPBP8B7.03c [Schizosaccharomyces pombe]gi|7490017|pir||T40797 60s ribosomal protein l2 - fission yeast (Schizosaccharomyces pombe)gi|19858781|sp|P35679|RL4A_SCHPO 60S ribos [nrdb_11152004_Chlamydomonas]
  • (P35679) 60S ribosomal protein L4-A (L2) [pompep4896_normal_reversed]
  • SPBP8B7.03c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBP8B7.03c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |rpl402|rpl4-2, rpl4|60S ribosomal protein L4 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • 60S ribosomal protein L4-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl402 PE=1 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 363 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    cytosolic large ribosomal subunit [ISSLink to PubMed article]
    Biological Process: translation [ISSLink to PubMed article]
    Molecular Function: structural constituent of ribosome [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAARPTVSI YSKDGSVSSE TIALPFVFKA PIRPDLVRSV HTAVAKNKRQ PYAVSEKAGH  60
   61 QTSAESWGTG RALARIPRVG GGGTHRSGQA AFGNMCRSGR MFAPTKTWRK WHVKVNQNEK 120
  121 RYAISSAVAA SGVPSLLLAR GHRIEEIPEV PLVVDDAVQS FQKTKEAVAL LKEIKAYRDV 180
  181 VKVANSRKLR AGKGKLRNRR HVQRRGPLVV FNEDAGIVKA FRNIPGVEIV NVRRLNLLQL 240
  241 APGGHLGRFV IWTKSAFGLL DSVFGSTTEA AQLKKNYFLP ENIISNADVT RLINSDEIQS 300
  301 IVKAAGPSRV KRAHVQKKNP LKNKAVLARL NPYAKAYKAN VKLNTGKTPK AAGEKFLTVL 360
  361 HEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered Lid1-TAP APC complex on iontrap. Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..363] PSI-BLAST 103.0 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle