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Protein Overview: tif6

General Information:
Name(s) found: tif6 / SPCC1919.09 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • translation initiation factor eIF6 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 244 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: positive regulation of translational initiation [IC]
    mature ribosome assembly [IEA]
    translation [IEA]
    Molecular Function: translation initiation factor activity [IEA]
    ribosome binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRAQFENS NEIGVFSNLT NSYALVALGG SENFYSVFEA ELGDVVPVVH TTIGGTRIIG  60
   61 RLTCGNRKGL LVPSSTTDNE LQHLRNSLPD PVKIQRVDER LSALGNIVAC NDYVALVHPD 120
  121 IERETEEIIA DVLDVEVFRQ TVAGNVLTGS YCALSNQGAL VHPRTSIQEQ DELSSLLQVP 180
  181 LVAGTINRGS DVIGAGLVVN DWCAFAGLDT TATELAVCES IFKLQDAQPS AIISNRDTLV 240
  241 ESYT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..244] PSI-BLAST 104.0 Ribosome anti-association factor eIF6 (aIF6)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation initiation factor activity
    		•  2.82313826209658 bayes_pls_golite062009
  • ribosomal large subunit binding
    		•  2.29551693750603 bayes_pls_golite062009
  • binding
    		•  1.48640777619976 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.14138534491569 bayes_pls_golite062009
  • hydrolase activity
    		•  1.05437300113124 bayes_pls_golite062009
  • catalytic activity
    		•  0.889920589881492 bayes_pls_golite062009
  • protein binding
    		•  0.21271994410782 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle