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Protein Overview: SPBC16C6.05

General Information:
Name(s) found: SPBC16C6.05 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • translation initiation factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 190 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEA]
    mitochondrion [IDALink to PubMed article]
    Biological Process: positive regulation of translational initiation [IC]
    mitochondrial translation [RCALink to PubMed article]
    translational initiation [IEA]
    Molecular Function: translation initiation factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQTIPKLK SVLYCDVCTL PVEYCEFEGT LKKCKEWLKS SHPDVYDKLY GEQDLSKDLE  60
   61 NTLNVSGTKD SNAEEQPAKL TKEEKRVERE EAKRMASKVL IKTIERTKRK RVTTVQGLDA 120
  121 FGIETKKAAK MLANKFATGA SVTKTADKKD EIVVQGDLNY DIFDFILEKF KEVPEDNIKI 180
  181 VEDTKSKKKQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] FFAS03 0.954 No description for 2ojlA was found.
    2 View Details [69..190] PSI-BLAST 27.30103 HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.36535619829821 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.221356879029422 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.213614307171087 bayes_pls_golite062009
  • protein binding
    		•  0.189517592830504 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle