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Protein Overview: sw-PJ

General Information:
Name(s) found: sw-PJ / FBpp0088428 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • The gene short wing is referred to in FlyBase by the symbol Dmel\sw (CG18000, FBgn0003654). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:20099034..20107456. It has the cytological map location 19C1. There is experimental evidence that it has the molecular function</span>: dynein light chain binding. There is experimental evidence that it is involved in the biological process</span>: centrosome localization; cytoplasmic transport; sperm individualization; microtubule cytoskeleton organization; eye photoreceptor cell differentiation; spindle organization; axon cargo transport. 43 alleles are reported. The phenotypes of these alleles are annotated with: wing margin; eye; cystic bulge; wing; dendritic arborising neuron; ommatidium; wing vein. It has 13 annotated transcripts and 13 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 663 amino acids

    Gene Ontology:
    Cellular Component: cytoplasmic dynein complex [NAS]
    Biological Process: centrosome localization [IMP]
    spindle organization [IMP]
    eye photoreceptor cell differentiation [IGI]
    sperm individualization [IMP]
    axon cargo transport [IMP]
    cytoplasmic transport [IMP]
    microtubule cytoskeleton organization [IMP]
    Molecular Function: microtubule motor activity [NAS]
    dynein light chain binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKAELERK KAKLAALREE KDRRRREKEI KDMEEAAGRI GGGAGIDKDQ RKDLDEMLSS  60
   61 LGVAPVSEVL SSLSSVNSMT SDNSNTQTPD ASLQATVNGQ SGGKKQPLNL SVYNVQATNI 120
  121 PPKETLVYTK QTQTTSTGGG NGDVLSCHSS PLSGYMEDWW RPRKAHATDY YDEYNLNPGL 180
  181 EWEDEFTDDE ESSLQNLGNG FTSKLPPGYL THGLPTVKDV APAITPLEIK KETEVKKEVN 240
  241 ELSEEQKQMI ILSENFQRFV VRAGRVIERA LSENVDIYTD YIGGGDSEEA NDERSHARLS 300
  301 LNRVFYDERW SKNRCITSMD WSTHFPELVV GSYHNNEESP NEPDGVVMVW NTKFKKSTPE 360
  361 DVFHCQSAVM STCFAKFNPN LILGGTYSGQ IVLWDNRVQK RTPIQRTPLS AAAHTHPVYC 420
  421 LQMVGTQNAH NVISISSDGK LCSWSLDMLS QPQDTLELQQ RQSKAIAITS MAFPANEINS 480
  481 LVMGSEDGYV YSASRHGLRS GVNEVYERHL GPITGISTHY NQLSPDFGHL FLTSSIDWTI 540
  541 KLWSLKDTKP LYSFEDNSDY VMDVAWSPVH PALFAAVDGS GRLDLWNLNQ DTEVPTASIV 600
  601 VAGAPALNRV SWTPSGLHVC IGDEAGKLYV YDVAENLAQP SRDEWSRFNT HLSEIKMNQS 660
  661 DEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] MSA 1.183992 View MSA. No confident structure predictions are available.
    2 View Details [100..663] PSI-BLAST 69.39794 No description for 2ovpB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle