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Protein Overview: Obp18a-PA

General Information:
Name(s) found: Obp18a-PA / FBpp0074470 [FlyBase]
Description(s) found:
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  • gi|24643172|ref|NP_573350.1| Odorant-binding protein 18a [Drosophila melanogaster] [NCBI NR]
  • gi|22832541|gb|AAF48918.2| Odorant-binding protein 18a [Drosophila melanogaster] [NCBI NR]
  • The gene Odorant-binding protein 18a is referred to in FlyBase by the symbol Dmel\Obp18a (CG15883, FBgn0030985). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:19029113..19029901. It has the cytological map location 18A3. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG15883-PA translation from_gene[CG15883 Obp18a FBgn0030985] seq_release:3 mol_weight=14072 cds_boundaries:(X:18,866,366..18,866,803[-]) aa_length:128 transcript_info:[CG15883-RA seq_release:3] gene_info:[gene symbol:Obp18a FBgn0030985 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VWM0) CG15883 protein [DrosMelano7227.FASTAC.txt]
  • CG15883-PA [Drosophila melanogaster]gi|24643172|ref|NP_573350.1| CG15883-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(19029436..19029771,19029826..19029876); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918; [fly-100309-contam.fasta]
  • CG15883-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Odorant-binding protein 18a CG15883-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(19029436..19029771,19029826..19029876); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(19029436..19029771,19029826..19029876); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Odorant binding protein 18a OS=Drosophila melanogaster GN=Obp18a PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(19029436..19029771,19029826..19029876); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918,FlyMine:FBpp0074470,modMine:FBpp0074470; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:complement(join(19135793..19135843,19135403..19135738)); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918,FlyMine:FBpp0074470,modMine:FBpp0074470; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(19135793..19135843,19135403..19135738)); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918,FlyMine:FBpp0074470,modMine:FBpp0074470; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Odorant binding protein 18a OS=Drosophila melanogaster GN=Obp18a PE=4 SV=2 [DROME.fasta.20160308]
  • FBpp0074470 type=protein; loc=X:complement(join(19135793..19135843,19135403..19135738)); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918,FlyMine:FBpp0074470,modMine:FBpp0074470; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(19135793..19135843,19135403..19135738)); ID=FBpp0074470; name=Obp18a-PA; parent=FBgn0030985,FBtr0074701; dbxref=FlyBase:FBpp0074470,FlyBase_Annotation_IDs:CG15883-PA,GB_protein:AAF48918.2,REFSEQ:NP_573350,GB_protein:AAF48918,UniProt/TrEMBL:Q9VWM0,FlyMine:FBpp0074470,modMine:FBpp0074470; MD5=3e4df0bf51c1d588da78f59b23eebfa8; length=128; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 128 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN][ISS]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVCSIAVL WICLITMWQS AGRVNAEGCL KHHNLTSAQV QAVAPSTPVA DVPVAVKCYS  60
   61 RCLIQDYFGD DGKIDLQKVG KRGSQEDHVI LSQCKQQFDG VTNLDTCDYP YLILQCYFKG 120
  121 KQSGTIAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] FFAS03 1.75 Complex of Drosophila odorant binding protein LUSH with butanol

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • odorant binding
    		•  4.34740138836018 bayes_pls_golite062009
  • pheromone binding
    		•  2.50061185527994 bayes_pls_golite062009
  • binding
    		•  1.71868583149917 bayes_pls_golite062009
  • phenylalkylamine binding
    		•  1.10044668642283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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