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Protein Overview: CG5800-PA

General Information:
Name(s) found: CG5800-PA / FBpp0074227 [FlyBase]
Description(s) found:
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  • gi|24642822|ref|NP_573230.1| CG5800 [Drosophila melanogaster] [NCBI NR]
  • gi|22832742|gb|AAF48747.2| CG5800 [Drosophila melanogaster] [NCBI NR]
  • gi|21429126|gb|AAM50282.1| RE19835p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5800 (CG5800, FBgn0030855). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:17530316..17533038. It has the cytological map location 16B10. Based on sequence similarity, it is predicted to have molecular function</span>: RNA helicase activity. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5800-PA translation from_gene[CG5800 CG5800 FBgn0030855] seq_release:3 mol_weight=92846 cds_boundaries:(X:17,367,327..17,369,880[+]) aa_length:826 transcript_info:[CG5800-RA seq_release:3] gene_info:[gene symbol:CG5800 FBgn0030855 gene_boundaries:(X [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VX34) CG5800 protein (RE19835p) [DrosMelano7227.FASTAC.txt]
  • CG5800-PA [Drosophila melanogaster]gi|21429126|gb|AAM50282.1| RE19835p [Drosophila melanogaster]gi|24642822|ref|NP_573230.1| CG5800-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:join(17530401..17530787,17530864..17532957); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747; MD5=23 [fly-100309-contam.fasta]
  • CG5800-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE19835p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:join(17530401..17530787,17530864..17532957); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(17530401..17530787,17530864..17532957); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG5800 OS=Drosophila melanogaster GN=CG5800 PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(17530401..17530787,17530864..17532957); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747,FlyMine:FBpp0074227,modMine:FBpp0074227; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG5800 OS=Drosophila melanogaster GN=CG5800 PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:join(17636368..17636754,17636831..17638924); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747,FlyMine:FBpp0074227,modMine:FBpp0074227; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(17636368..17636754,17636831..17638924); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747,FlyMine:FBpp0074227,modMine:FBpp0074227; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0074227 type=protein; loc=X:join(17636368..17636754,17636831..17638924); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747,FlyMine:FBpp0074227,modMine:FBpp0074227; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(17636368..17636754,17636831..17638924); ID=FBpp0074227; name=CG5800-PA; parent=FBgn0030855,FBtr0074453; dbxref=FlyBase:FBpp0074227,FlyBase_Annotation_IDs:CG5800-PA,GB_protein:AAF48747.2,REFSEQ:NP_573230,GB_protein:AAF48747,UniProt/TrEMBL:Q9VX34,FlyMine:FBpp0074227,modMine:FBpp0074227; MD5=2380ec9d0f567e28cdb076e5ca4a64fa; length=826; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 826 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    RNA helicase activity [ISS]
    ATP-dependent helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQKPKGPG KPGSRFKPGS GTFKGAGGGR KSGDNSQKRP RQEINKSRLA ATEAEIQDLK  60
   61 TKYAEIDATA IKKFAQFPLS KKTQKALAES KFVHPTQVQR DSIGPALQGK DVLGAAITGS 120
  121 GKTLAFLIPV LEHLFMNKWS RTDGVGAIII SPTRELAYQI FETLKKVGKH HDFSAGLIIG 180
  181 GKNLKFERTR MDQCNILICT PGRLLQHMDE NPLFNTSTME MLVLDEADRC LDMGFQKTLN 240
  241 SIIENFPPVR QTLLFSATQT NTVQDLARLN LKDPVYVGYG GATPREEPSA STKKTPNTAV 300
  301 LAVPELLQQS YVVLNLEDKI TMLWSFIKNH LKQKIIVFVA SCKQAKYLYE IFCKLRPGSP 360
  361 LLALYGTLHQ DRRIAIYEDF LRKSHVVMFS TDVASRGLDF PAVNWVVQLD CPEDVSQYIH 420
  421 RAGRSARNKT RGECLLVLTP SEEEYMISAL KEQLNIDIRC VQIDPKKLFS PRVKIEAFLA 480
  481 QFPELRATAQ RAFLSYIKSV FLMRNKRLFN VFSLDLDAFA QSLGLAVTPR VPFLEKFLWR 540
  541 QKQLQQQKEQ GDNAKSINPL LSKLTKQQSF GGGDEDEENS DDEDFIKVKR KDHDVEGEPV 600
  601 KLDEEDDTEN EAEAPLVVPK REKLVTKASL AKKALKKNLQ VNSKLKFDDE GETMADDRSQ 660
  661 MKALSARQRT VNQDDDDGGI NLVLSKALLT EEDQYDKQRF RELVKKRHKL QREKLRKKAE 720
  721 EAKGSDDEEE QQDDDNADDA GSESDHSVDL SWLPDPDKVY KNKPNASDRN ESKSESSDAS 780
  781 DDEKADDSDG DDDDVSDDEP AYKKSKLTNK MTLMDTEAIA ASLLGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] PSI-BLAST 54.69897 No description for 2pl3A was found.
    2 View Details [153..282] FFAS03 6.82 No description for 2pl3A was found.
    3 View Details [283..455] PSI-BLAST 29.154902 No description for 2hjvA was found.
    4 View Details [456..826] PSI-BLAST 8.221849 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle