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Protein Overview: CG1998-PA, FBpp0...

General Information:
Name(s) found: FBpp0309847 [FlyBase]
CG1998-PA / FBpp0073618 [FlyBase]
Description(s) found:
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  • gi|7292879|gb|AAF48271.1| CG1998 [Drosophila melanogaster] [NCBI NR]
  • gi|18859821|ref|NP_572887.1| CG1998 [Drosophila melanogaster] [NCBI NR]
  • gi|17945608|gb|AAL48855.1| RE26969p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=X:complement(13303632..13303782,13303847..13304301,13304375..13304550,13305385..13305458,13306295..13306449,13306520..13306729); ID=FBpp0309847; name=CG1998-PC; parent=FBgn0030485,FBtr0343148; dbxref=FlyBase:FBpp0309847,FlyBase_Annotation_IDs:CG1998-PC; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG1998 (CG1998, FBgn0030485). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:13303402..13307107. It has the cytological map location 11F4. Based on sequence similarity, it is predicted to have molecular function</span>: C-4 methylsterol oxidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: oxidation reduction; fatty acid biosynthetic process. 9 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG1998-PA translation from_gene[CG1998 CG1998 FBgn0030485] seq_release:3 mol_weight=45776 cds_boundaries:(X:13,140,261..13,143,355[-]) aa_length:406 transcript_info:[CG1998-RA seq_release:3] gene_info:[gene symbol:CG1998 FBgn0030485 gene_boundaries:(X [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VYD2) CG1998 protein (RE26969p) [DrosMelano7227.FASTAC.txt]
  • (AE003492) CG1998 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1998-PA [Drosophila melanogaster]gi|17945608|gb|AAL48855.1| RE26969p [Drosophila melanogaster]gi|18859821|ref|NP_572887.1| CG1998-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(13303632..13303782,13303847..13304301,13304375..13304550,13305385..13305458,13306295..13306449,13306520..13306729); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotatio [fly-100309-contam.fasta]
  • RE26969p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG1998-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(13303632..13303782,13303847..13304301,13304375..13304550,13305385..13305458,13306295..13306449,13306520..13306729); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(13303632..13303782,13303847..13304301,13304375..13304550,13305385..13305458,13306295..13306449,13306520..13306729); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG1998, isoform A OS=Drosophila melanogaster GN=CG1998 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(13303632..13303782,13303847..13304301,13304375..13304550,13305385..13305458,13306295..13306449,13306520..13306729); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271,FlyMine:FBpp0073618,modMine:FBpp0073618; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271,FlyMine:FBpp0073618,modMine:FBpp0073618; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0309847; name=CG1998-PC; parent=FBgn0030485,FBtr0343148; dbxref=GB_protein:AHN59680,REFSEQ:NP_001285210,FlyBase:FBpp0309847,FlyBase_Annotation_IDs:CG1998-PC; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271,FlyMine:FBpp0073618,modMine:FBpp0073618; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0309847; name=CG1998-PC; parent=FBgn0030485,FBtr0343148; dbxref=GB_protein:AHN59680,REFSEQ:NP_001285210,FlyBase:FBpp0309847,FlyBase_Annotation_IDs:CG1998-PC; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0073618 type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271,FlyMine:FBpp0073618,modMine:FBpp0073618; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0309847 type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0309847; name=CG1998-PC; parent=FBgn0030485,FBtr0343148; dbxref=GB_protein:AHN59680,REFSEQ:NP_001285210,FlyBase:FBpp0309847,FlyBase_Annotation_IDs:CG1998-PC; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0073618; name=CG1998-PA; parent=FBgn0030485,FBtr0073787; dbxref=FlyBase:FBpp0073618,FlyBase_Annotation_IDs:CG1998-PA,GB_protein:AAF48271.1,REFSEQ:NP_572887,GB_protein:AAF48271,UniProt/TrEMBL:Q9VYD2,FlyMine:FBpp0073618,modMine:FBpp0073618; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=X:complement(join(13412487..13412696,13412262..13412416,13411352..13411425,13410342..13410517,13409814..13410268,13409599..13409749)); ID=FBpp0309847; name=CG1998-PC; parent=FBgn0030485,FBtr0343148; dbxref=GB_protein:AHN59680,REFSEQ:NP_001285210,FlyBase:FBpp0309847,FlyBase_Annotation_IDs:CG1998-PC,UniProt/TrEMBL:Q9VYD2; MD5=29e3a51f28a5c44c222b1e7a7d0f75fe; length=406; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IEA]
    Biological Process: oxidation reduction [IEA]
    fatty acid biosynthetic process [IEA]
    Molecular Function: C-4 methylsterol oxidase activity [ISS]
    iron ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPVHGKPP NSMGLSSGSL SASSPISVSQ QAGSSGNSSS SSSSSSSYSL GGGIVKDKAG  60
   61 LPPVYLNLND NAKEQTPLPG SPLQNWDDAR TADVWLSSLH SVIFIITCAL AAFILFRNVL 120
  121 TWHLQSFWGA SGDFWQSQWD KFIDSFGDEP MVLWVFGTTI FTMLVYWTVG TLYTFMDLTN 180
  181 RPACLRKYKI QPGTNEPVEV RRLLKVIWCV VCNQIFVGIP LAYASYRLME IRGLSDIRDL 240
  241 PTFHWVCFEL TVCILMEELG FYYSHRLLHH KHIYKYIHKQ HHEWTAPISV TAIYCHPIEH 300
  301 IFSNLLPPFL GVFLMGSHVA TAWLWFALAI LSTLNAHSGY HLPFFPSPEA HDFHHLKFNN 360
  361 CFGVLGVLDR LHGTDSLFRA TKSYARHIMM LSFKPPRDAF PDPTMK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..232] MSA 2.457997 View MSA. No confident structure predictions are available.
    2 View Details [233..406] Pfam 31.657577 No description for PF04116.4 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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