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Protein Overview: Rbm13-PA, FBpp03...

General Information:
Name(s) found: FBpp0311991 [FlyBase]
Rbm13-PA / FBpp0071198 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • type=protein; loc=X:join(8795831..8795845,8795913..8795959,8796031..8796844,8797235..8797390); ID=FBpp0311991; name=Rbm13-PB; parent=FBgn0030067,FBtr0346163; dbxref=FlyBase:FBpp0311991,FlyBase_Annotation_IDs:CG10648-PB; MD5=ad88df6b226750b3d3dd34b7a18a7074; length=343; release=r5.56; species=Dmel; [FlyBase]
  • The gene RNA-binding motif protein 13 is referred to in FlyBase by the symbol Dmel\Rbm13 (CG10648, FBgn0030067). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:8795722..8797511. It has the cytological map location 8B7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 343 amino acids

    Gene Ontology:
    Cellular Component: ribosome [IEA]
    Biological Process: mitotic spindle elongation [IMP]
    translation [IEA]
    Molecular Function: structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHDDVVWSI INKSFCSHKV KTDTRTFCRH EYNLTGLCTR RTCPLANSQY ATVREEKGII  60
   61 YLFIKTAERA HMPSKLWERI KLSRNFEKAI EQINENLVFW PKYMIAKNKQ RFLKITQYLI 120
  121 RMRRLKLRRQ KLIVPLSTKI ERREARREEK ALVAAKIDNH IEKALMDRLK NGTYRDIYNF 180
  181 SQTAFNKALE AERVDEDDEE ELDDEDENEE QLEREMEVDG DDSREAEEVQ RSLLDEEFVE 240
  241 ADTDDEEEDD DDDDDDDEDD YDSDSGKREE VEVGSDFEES DEDDDADADD IEETKVPAKK 300
  301 TASKAKKDKK SPAGNSRRSR SKPKLQLEYE YEVEKEAQRQ MRH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] MSA 2.043944 View MSA. No confident structure predictions are available.
    2 View Details [191..343] MSA 5.047992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle