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Protein Overview: Rbcn-3A-PA

General Information:
Name(s) found: Rbcn-3A-PA / FBpp0070900 [FlyBase]
Description(s) found:
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  • gi|24640072|ref|NP_572302.1| CG3585 [Drosophila melanogaster] [NCBI NR]
  • gi|22831800|gb|AAF46135.2| CG3585 [Drosophila melanogaster] [NCBI NR]
  • The gene Rabconnectin-3A is referred to in FlyBase by the symbol Dmel\Rbcn-3A (CG3585, FBgn0023458). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:6135434..6147287. It has the cytological map location 5E1-5E3. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: regulation of Notch signaling pathway; vacuolar acidification; open tracheal system development. 5 alleles are reported. The phenotype of these alleles is annotated with: tracheal system. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG3585-PA translation from_gene[CG3585 CG3585 FBgn0023458] seq_release:3 mol_weight=376929 cds_boundaries:(X:5,981,843..5,993,630[-]) aa_length:3419 transcript_info:[CG3585-RA seq_release:3] gene_info:[gene symbol:CG3585 FBgn0023458 gene_boundaries:(X [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W425) CG3585 protein [DrosMelano7227.FASTAC.txt]
  • CG3585-PA [Drosophila melanogaster]gi|24640072|ref|NP_572302.1| CG3585-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(6135497..6135697,6135761..6135844,6135906..6136039,6136100..6136174,6136248..6136317,6136387..6136656,6136718..6136805,6136864..6137128,6137187..6137543,6137623..6137847,6137906..6138985,6139047..6146024,6146448..6146596,614 [fly-100309-contam.fasta]
  • CG3585-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(6135497..6135697,6135761..6135844,6135906..6136039,6136100..6136174,6136248..6136317,6136387..6136656,6136718..6136805,6136864..6137128,6137187..6137543,6137623..6137847,6137906..6138985,6139047..6146024,6146448..6146596,6146661..6146916,6147260..6147287); ID=FBpp0070900; name=CG3585-PA; parent=FBgn0023458,FBtr0070939; dbxref=FlyBase:FBpp0070900,FlyBase_Annotation_IDs:CG3585-PA,GB_protein:AAF46135.2,REFSEQ:NP_572302,GB_protein:AAF46135; MD5=10b137dadc7574bfeebc7eb1669186a3; length=3419; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(6135497..6135697,6135761..6135844,6135906..6136039,6136100..6136174,6136248..6136317,6136387..6136656,6136718..6136805,6136864..6137128,6137187..6137543,6137623..6137847,6137906..6138985,6139047..6146024,6146448..6146596,6146661..6146916,6147260..6147287); ID=FBpp0070900; name=CG3585-PA; parent=FBgn0023458,FBtr0070939; dbxref=FlyBase:FBpp0070900,FlyBase_Annotation_IDs:CG3585-PA,GB_protein:AAF46135.2,REFSEQ:NP_572302,GB_protein:AAF46135; MD5=10b137dadc7574bfeebc7eb1669186a3; length=3419; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG3585 OS=Drosophila melanogaster GN=Rbcn-3A PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
    • Organism: Drosophila melanogaster
    Length: 3419 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of Notch signaling pathway [IMP]
    vacuolar acidification [IMP]
    open tracheal system development [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILCHRSSCV LTKSPFRPSY YQAYAAGCNV VILASTFERV QIIPGANHGY VKISALDCST  60
   61 DTGKIAAAYE NKICIFEPTP VIESSKHNTH FLDYRWVQTG SFTSHSNVVT LSWNLEGTRL 120
  121 LTGGTNIQLW KSKSPTHQQE EEHTGVKFEI GESKEPKQTS NAQSEDVSTW ENIWSCQTAI 180
  181 PIYHMAFSPD GTLFATCGRN DRLVKIWYEN KQVLFPAKGS SNAGPTPSCR HGVDDGTTSS 240
  241 SGGELNFTYV YIAHPRAVSN IVWRKTSKYM PKGSVANMLV TSCLDNICRI WIETVLPDDG 300
  301 MVNMTQFDPM ASQNPKFRTH RHKHRFMQRL KHMKTCFHIR RHMKAGASAV PGAASAGAAS 360
  361 GGGTAGAMGG MGSSPASYTN YLGPIPSLPS SCSVHDFHSY GFQGSGVTPG MHFHLAASIN 420
  421 AETDIPLVPS MQTSDPANQN VFILHWLNNK EMHFTLQAEA ILQELTKKVI DEENGHGNAS 480
  481 SGGVDLPDDA HGSHSQAHAH KKYLRSSKSV SVDDSGEEFS RYSQHTAGTG MGGGGGGAGL 540
  541 HLNSMSNTTS QNSLNNEPAH PITQLVDSLD NKIECLLRDW HQSPDLLFAI HPVDGSYLIW 600
  601 VIEWLDDYYP GSFRQAQVSF STRIPSAFPL GDAMSMSTTV SLFNTGTHPL AFRDIANNVR 660
  661 SKDEFHKGHA DDSSLKSDQH SGQTFERHDE EQEDAADDDG DGDREGDADQ DEGGGDRSAA 720
  721 ASGGGAAEHS SSSQDSAATG ASALPLNVSP SVSMVTKHSN GTLNLWQLTF AFKTKFTQVL 780
  781 SIGHVSRASG HRFRVNDITC HPVLPLLVST SHHNLPDSEA KSPMSLFEQP LSGGLPSGGG 840
  841 TGAGPSVGSN GDKDVFTPTG FCSELILWRV DSVGPLCHSG GVSELARINS PEISAFSNVA 900
  901 WIPTLLPSTT LGSYSNSPSA CFVASDGENL RVYQAVIDAR TLLAEISCSE NLNTLHKSHS 960
  961 LSSMISNASS TMRAQRSALH DKLKVVSQQS TARPGCILQL DAISDAKHDW QNTQFLHVFQ1020
 1021 AQLITGGQRT PQADPHDLEE PRLNALLESD MDAIVDLQRN ADFEEPFYIV NIEKTLRGST1080
 1081 IHMWRIVISS KQQSSFLSET AMYVPDSNLT QEPDEDGAGG NPNPRRMSQG AETLTGAEHF1140
 1141 GPQVEAPHIS ITTKKVCTQE LPLPEGVDVI HASPAAGHLS SSSIYPACFA PYIIVTACSD1200
 1201 SISRFWKCEP IGDEDDPNPE GDAYHWSEWK MFSRIQHSAI EIPGQPLNIS AAYSGRIACA1260
 1261 YKYGKSFTRP NKGPDPDSRY VNLCVAIYEC ESSGGSEWVL EDTIHLKNVH LPRINIGHGI1320
 1321 DLSYLHDSRL LAKKQRLNQV LHTFAHDPES RSPRSGETTP ELAVNRQPSA AASGLLTVPS1380
 1381 FSTLQSLRKS IAENGNTCPL TQKHLVQLDW VSKEDGSHIL TVAVGSKILL YTPVSSDIAQ1440
 1441 ANIKAMKESR SVNRPILRKA SSLAQPNFVD EIRWMKLRQI DLQTADGLPP LPMQISWVRD1500
 1501 GILVVAMDSE MHVYSQWKPH YSSHFAAAAA AAGEDVPDTR NLRDEDLRSL ANESTQLRLK1560
 1561 NVASMPLISK VSTANLQLLS HDKKRRLGNT SMANMNGAGG AGGTGTYGGG ADDGGNDDYM1620
 1621 TDFGLFQASR IACPVLPQYH PKQLMELLNC GKIRWVKAIL AHLVRCMSGN SSSTVNQDDD1680
 1681 GYARQRSWSR SRTLSISYTA DQNIQAEHRG STTQIPEELM LDYAEINSIP PLPLWVLLNA1740
 1741 DRETPGQSNN YAEGDKDYDE LFDMHNSEDN LDELLSEGDE KKRQERRLSL PEKHSISHFG1800
 1801 PRQGQLLSRL LTHTHLPGLS SLDQMHLLAL ADTVATCNTD FSDKFAADQG KSGGMAGGAG1860
 1861 SGAVKDGSTS TDSLDDCGLR FLLAMKHFTY LLRCLPLQQR AQFQRQGVGT SNIVWAFHSE1920
 1921 SEEELLNLIP SYTKGDLRWA TLRDLGVGYW LKNINTLRRC VEKLAKCAYQ QKQEPLDAAI1980
 1981 YYLAMKKKSL VWGLFRSRRD EKMTAFFGNN FAEDRWRKAA LKNAFVLLGK QRFEHAVAFF2040
 2041 LLANSLNDAI EVCMNKLEDF QLALIIARLY EGDGEGCYYH HLLHEHILGT DAATGRCDLS2100
 2101 RAHPDPFLRS MTYWTIKKYQ ESLNTLLLNN VGSLHSSYRE EDLLRPEQQA TNPNVFNFYI2160
 2161 YLRTHPLLIR QNIALSAQEK RIAHVVLSGF NYAGDAAPSA VACDKQLQLE DSITPIERQL2220
 2221 YFTTAHGHFK SGCPALALEV LNKLPQKISD DSGGSVAGSQ AQERAQQNKE ELINTGIMDQ2280
 2281 WGATPAAASN TADAFDWGAP VSSEPEAKFE IKWDDEDEEE DPDLEPDEPE LATPQPQAPI2340
 2341 LGRGKSNGND TKMDIMAQQL KFVACLKILM EELSTLATGF EVDGGQLRYQ LYMWLEREVE2400
 2401 ALKQLCNYCS QAEQSSHESG DADAEARDKE MNASIYPSTE RPTLHEILMQ DKQDFEAKVM2460
 2461 RAAKRKRWLK ANETLLRTLL SYCSLHGASG GGLASVRMEL VLLLQELQQE KTQQQLLSPL2520
 2521 PFPTTLPLLS ACVAGNKTVI ADPIKYLQSQ TVDMLQSIIK VLPFPGIEPS ALSEIFVLRD2580
 2581 LAVALSSCIY QSLCDSESFV VNNSAFNGYP SPGMENIAKI NSSFECSYLV GSRNAYGRRR2640
 2641 KYSTDEPAGV CTTPSKWPGV TNLRALLARE KDEDVPKLNV LLLESFVSTY MALFIYSLST2700
 2701 CDSRLLYRLS GQSFNNETWS TLFGGGMKKL LIKPAAAPPP TQMVTGGAGA GGASGGTGST2760
 2761 SEEPTDENSV WNTVTSITKQ RMKLNMKILG SFSQNSTSSN MKEDKPTYRE QFMPPETSML2820
 2821 SYFLTKPPTT ECDDYDTDDS HESDNEEEEE DDDDVNVSRS QLKAKDNTEH TNPTSYSWSI2880
 2881 LRLALIKIST HKIQELVKVA GIELQDLPVI SPLSHEVLRT LNRWQDFALS DLIARGPPSR2940
 2941 NYIPGCYAES GINGLAIHKY RSLLNKDNTP FVSGSSAGPI RRLWNYLVRQ EPAQEVFIKS3000
 3001 IFVKNMEPST RGSHHTNNDN ETDEGQSHST NENTDHIRII HKDHESILSF CLKNNSSSMI3060
 3061 AFANPREIQE FDISLLLESP NWYEDECDYD MMNLSKDADT NSSSFLIIQT QEQNQFGSNS3120
 3121 NAYSESNAST QSASQSGRGT SMVLRHKVDN VKRMSAHPLM PLYLTGGQDG SVQIWEWGHQ3180
 3181 QPVCSPRTSG TFAKVTRCRF SEQGNKFGIG DGDGKLSLWQ AGIASQNNRS FISYQCHNKA3240
 3241 LSDFVFLGSC SLLASAGQSS ENKNINIWDT LLPHKKSCVS AFTCHDQGSS CLVFAPQHQV3300
 3301 LISCGKRGDV CVFDVRQRTL RHRYQAHDST IKCIALDPHE EFFVTGSIEG DIKIWDMNQF3360
 3361 MLINTFPHEH AKNGFFKHTG QGVSQVYVDA FGRLFSCGSD GCMKVRLLVE KDNIVHSVY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle