YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: l(1)G0144-PA, FB...

General Information:
Name(s) found: FBpp0311476 [FlyBase]
l(1)G0144-PA / FBpp0070398 [FlyBase]
Description(s) found:
Found 27 descriptions.
SHOW ALL
  • type=protein; loc=X:complement(2154727..2155448,2155499..2155887,2155984..2156069); ID=FBpp0311476; name=l(1)G0144-PB; parent=FBgn0027296,FBtr0345316; dbxref=FlyBase:FBpp0311476,FlyBase_Annotation_IDs:CG3073-PB; MD5=374697d9558aba758056e1393519d2cb; length=398; release=r5.56; species=Dmel; [FlyBase]
  • The gene lethal (1) G0144 is referred to in FlyBase by the symbol Dmel\l(1)G0144 (CG3073, FBgn0027296). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:2154236..2156560. It has the cytological map location 2F2. Based on sequence similarity, it is predicted to have molecular function</span>: Rab geranylgeranyltransferase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: protein amino acid prenylation. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: Rab-protein geranylgeranyltransferase complex [ISS]
    Biological Process: protein amino acid prenylation [IEA]
    Molecular Function: Rab geranylgeranyltransferase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERNEKKV LCEKIIRDIN AVFLKDQDLA SFEIIPKEAN CNKSPVVHVE HNLGLESWCA  60
   61 QHVYDHAHRT LISHRRQTTA QQLRTLQQQQ QSDSLAKYLN VALLINPDVT TFWHIRRQLV 120
  121 QKNRLSINKE LQFSALVLSI KPKSNEAFAY RRWLYSFQSA DAIDWPNEIG ICERAADRCA 180
  181 SNYHAWSHRQ WILQNGPCLL QSELLRTEKF MRKHISDYSC YHYRQVLLSR AYELSFALPK 240
  241 DSGASGSSTL ASLQHLMTSY GLECEANAED LLGLLLPHVD LSSVSKQRLI SFLYCCNVAA 300
  301 NDMRLCAEQR LMYGSRDCFE LHRRAALKFI VEQCVRLQMG LPNGQLLPVA SGDLRSHLGN 360
  361 FDFEDNPFLS AVRREESTLG GKHRRWCNLH LSFGYPAD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..398] PSI-BLAST 42.30103 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.726259215943938 bayes_pls_golite062009
  • protein binding
    		•  0.515862444383273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle