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Protein Overview: FBpp0309623, FBp...

General Information:
Name(s) found: FBpp0309623 [FlyBase]
FBpp0309622 [FlyBase]
Vinc-PA / FBpp0070404 [FlyBase]
Description(s) found:
Found 36 descriptions.
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  • type=protein; loc=X:complement(2109048..2109155,2109288..2109686,2109746..2109876,2109938..2112128,2114406..2114462); ID=FBpp0309623; name=Vinc-PC; parent=FBgn0004397,FBtr0342771; dbxref=FlyBase:FBpp0309623,FlyBase_Annotation_IDs:CG3299-PC; MD5=7ba1cabc671dbbfd1d32e5bb45c63106; length=961; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:complement(2109048..2109155,2109288..2109686,2109746..2109876,2109938..2112128,2114406..2114462); ID=FBpp0309622; name=Vinc-PB; parent=FBgn0004397,FBtr0342770; dbxref=FlyBase:FBpp0309622,FlyBase_Annotation_IDs:CG3299-PB; MD5=7ba1cabc671dbbfd1d32e5bb45c63106; length=961; release=r5.56; species=Dmel; [FlyBase]
  • The gene Vinculin is referred to in FlyBase by the symbol Dmel\Vinc (CG3299, FBgn0004397). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:2108319..2116492. It has the cytological map location 2E2-2E3. Based on sequence similarity, it is predicted to have molecular function</span>: actin binding. There is experimental evidence that it is involved in the biological process</span>: phagocytosis, engulfment. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 961 amino acids

    Gene Ontology:
    Cellular Component: focal adhesion [ISS]
    actin cytoskeleton [IEA]
    Biological Process: phagocytosis, engulfment [IMP]
    cell adhesion [IEA][NAS]
    cytoskeletal anchoring at plasma membrane [ISS]
    Molecular Function: actin binding [ISS]
    structural molecule activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVFHTKTIE SILDPVAQQV SRLVILHEEA EDGNAMPDLS RPVQVVSAAV ANLVKVGRDT  60
   61 INSSDDKILR QDMPSALHRV EGASQLLEEA SDMLRSDPYS GPARKKLIEG SRGILQGTSS 120
  121 LLLCFDESEV RKIIQECKRV LDYLAVAEVI NTMEQLVQFL KDLSPCLSKV HREVGAREKE 180
  181 LTHQVHSEIL VRCLEQVKTL APILICSMKV YIHIVEQQGR GAEEAAENRN YLAARMSDEL 240
  241 QEIIRVLQLT TYDEDTSELD NLTVLKKLSN AISNKMEQAN EWLSNPYALR GGVGEKALRQ 300
  301 VIDNATEISE RCLPQDSYPI RKLADEVTAM ANTLCELRQE GKGQSPQAES LVRGIRDRMG 360
  361 ELKSLVHQAV LGVDKAGVQQ TAHTIQGRLE QAVKWLQHPE INDGGLGERA INLIVEEGRK 420
  421 VAEGCPGHQK AEIQQLCDEV ERLKRQAAGS GPAAKQAAKQ LTQKLYELKA AIQNALVNRI 480
  481 VQDFMDVSTP LKQFTEAVLQ PEGTPGREQN FNQKSNNLQA FSDRASKTSR MVAAGGACGN 540
  541 KKIAEILLSS AAQVDSLTPQ LISAGRIRMN YPGSKAADEH LQNLKQQYAD TVLRMRTLCD 600
  601 QATDPADFIK TSEEHMQVYA KLCEDAIHAR QPQKMVDNTS NIARLINRVL LVAKQEADNS 660
  661 EDPVFTERLN AAANRLERSL PAMVGDAKLV ATNIADPAAA AAWKNSFQRL LGDVREVRDA 720
  721 IAPPQPPPLP TSLPPPIPEL SALHLSNQNA ERAPPRPPLP REGLAPVRPP PPETDDEDEG 780
  781 VFRTMPHANQ PILIAARGLH QEVRQWSSKD NEIIAAAKRM AILMARLSEL VLSDSRGSKR 840
  841 ELIATAKKIA EASEDVTRLA KELARQCTDR RIRTNLLQVC ERIPTIGTQL KILSTVKATM 900
  901 LGAQGSDEDR EATEMLVGNA QNLMQSVKET VRAAEGASIK IRSDQTSNRL QWVRRQPWYQ 960
  961 Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..38] PSI-BLAST 20.0 Vinculin head (0-258) in complex with the talin vinculin binding site 2 (849-879)
    2 View Details [39..961] PSI-BLAST 32.69897 Crystal structure of human full-length vinculin (residues 1-1066)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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