YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: Nmd3-PA

General Information:
Name(s) found: Nmd3-PA / FBpp0070409 [FlyBase]
Description(s) found:
Found 24 descriptions.
SHOW ALL
  • The gene Nonsense-mediated mRNA 3 is referred to in FlyBase by the symbol Dmel\Nmd3 (CG3460, FBgn0023542). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:2076851..2078683. It has the cytological map location 2E1. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding; protein binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: ribosomal large subunit export from nucleus. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 521 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: ribosomal large subunit export from nucleus [ISS]
    Molecular Function: protein binding [ISS]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHEYVGVSP LGAADGKGAG SNAVILCCEC GVAIQPNPAN MCVTCLRNHV DITENIPKQA  60
   61 VLHFCRNCER YLQPPNEWIQ AALESRELLA ICLKKLKGLK EVKLVDAGFI WTEQHSKRIK 120
  121 VKLTVHGEII GGTMLQQVFV VEFTVQNQMC NDCHRTEAKD FWRCLVQVRQ RAENKKTFYY 180
  181 LEQLILKHKA HENTLGIKPE HGGLDFFYAN DNHARRMVDF LLTMVPGKVT TSKRLISHDI 240
  241 HSNNYNYKYN WSVEIAPVSK DSAVCLSKKL RHQLGNLSPL VLVNRVSSSI HLIDPLTAQI 300
  301 AELTSQVYFR APFEAVCNPK QLVEYVVMDI DVIMEKDRKT YPGQGQVSFK HALCDIWVVR 360
  361 ASELGINDNP IHTRSHLGHL LKVGDSVMGY NTGEANINDL EFDKLSSDEI PDVILVRKHY 420
  421 DRQTRLSQRV WKIKHLAAEA TDERSKYDYH EFLDDLEENE DIRGQVNIYR DTNKTIPIEV 480
  481 QAAGGDVPQI TLEEMLEDMT LECADDEMGE EGGADDTEPQ L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] MSA 4.063991 View MSA. No confident structure predictions are available.
    2 View Details [83..159] deduced N/A No confident structure predictions are available.
    3 View Details [160..333] MSA 1.06499 View MSA. No confident structure predictions are available.
    4 View Details [334..445] deduced N/A No confident structure predictions are available.
    5 View Details [446..521] MSA 2.027997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle