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Protein Overview: gi|7302107, gi|7...

General Information:
Name(s) found: gi|74867920 [NCBI NR]
gi|7302107 [NCBI NR]
gi|24651778 [NCBI NR]
Description(s) found:
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  • gi|74867920|sp|Q9V9S7.1|SYDE_DROME RecName: Full=Rho GTPase-activating protein 100F; Short=RhoGAP-100F; AltName: Full=Synapse defective protein 1 homolog; Short=Protein syd-1 homolog [NCBI NR]
  • gi|7302107|gb|AAF57207.1| RhoGAP100F [Drosophila melanogaster] [NCBI NR]
  • gi|24651778|ref|NP_651902.1| RhoGAP100F [Drosophila melanogaster] [NCBI NR]
  • Rho GTPase-activating protein 100F OS=Drosophila melanogaster GN=RhoGAP100F PE=1 SV=1 [Swiss-Prot]
  • >CG1976-PA translation from_gene[CG1976 RhoGAP100F FBgn0039883] seq_release:3 mol_weight=195453 cds_boundaries:(3R:27,647,965..27,656,854[+]) aa_length:1844 transcript_info:[CG1976-RA seq_release:3] gene_info:[gene symbol:RhoGAP100F FBgn0039883 gene_bo [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V9S7) CG1976 protein [DrosMelano7227.FASTAC.txt]
  • (AE003780) CG1976 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1976-PA [Drosophila melanogaster]gi|24651778|ref|NP_651902.1| CG1976-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(27658599..27658625,27659119..27659703,27659760..27660018,27660097..27661199,27661265..27662375,27662444..27662523,27662594..27662908,27663492..27663749,27665602..27665725,27665819..27667491); ID=FBpp0085228; name=RhoGAP100F-PA; p [fly-100309-contam.fasta]
  • CG1976-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RhoGAP100F CG1976-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(27658599..27658625,27659119..27659703,27659760..27660018,27660097..27661199,27661265..27662375,27662444..27662523,27662594..27662908,27663492..27663749,27665602..27665725,27665819..27667491); ID=FBpp0085228; name=RhoGAP100F-PA; parent=FBgn0039883,FBtr0085869; dbxref=FlyBase:FBpp0085228,FlyBase_Annotation_IDs:CG1976-PA,GB_protein:AAF57207.1,REFSEQ:NP_651902,GB_protein:AAF57207; MD5=081d50abd45c4c6239e68fc972b2e426; length=1844; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
    • Organism: Drosophila melanogaster
    Length: 1844 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: signal transduction [IEA]
    Molecular Function: protein binding [IEA]
    GTPase activator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQPAEMAE NGRSVPDVTA SPGRAPPGPL PANQMPAMGN QQHHGNQQHH GNQQQHHGNQ  60
   61 HSNHRGQSGS LSNAAGVKDP VMLQGDFRKV SGISSEIFRQ IEAVENDHDP NTAAALEAVE 120
  121 RRGEMIVRVL EPRCMGSKQA VDAAHKLMNK ADARHTVQLV EIVKRPGQTL GLYIREGNGA 180
  181 DRTDGVFISR IALESAVYNS GCLRVGDEIL AVNLVDVTHM SLDDVVIIMS IPRRLVLAIR 240
  241 QRRGNRGTGS PGPPTLSRPE QKPPPVVVIK RDLRDEDLDE TDRMPRPRSS RDGREMTESR 300
  301 SRLGLGLNNY SPQSEQLDMY YNTRGGGGGA MGEPPNWGYK PPPPPSSVIT EQPTKAHAFA 360
  361 PSHAYYQNAG TLESLAEKVH AFYPGQPGGP PVGPSRRMST GTGNVGLAQQ HARFPRSGSD 420
  421 QHLPRVEYSD YSNSLGRHSL LRSSLKPGTT GGAPMQVGVG GTLGRYGRYD QQRAGVSKYG 480
  481 PPSGGAQSLT RRSRPNLDYS SDTEATIGPR PSYYYYNRPA IGSMSRGSGG AGGGVGAAST 540
  541 AALLAGAADL NKFNSLPRER PGTRLQGIRS RMGDRLVDEN DGNTSAPEFD VRRGRDLRQR 600
  601 ITASPSIFTA DEYRAWLRRA PSSSAIAEQM RMTRDMFAQP RAQRFSCSAE NIHDALRNTE 660
  661 SIYSSRNHIL GTGTLDRNMG LTRPISALPV RSMSSQHIGG AGSIRSPSIR RMRQLLELSA 720
  721 GPASPSGSIL STGGHQSPAP TPSATLPRPH RQIDINPAEF AKYKLDKPIV DIGGISGMLW 780
  781 IHLLAGRGLR TAPEGAAGTA TQGQTRDLYC VIECDRVHKA RTVVRSGDLQ FDWDESFELD 840
  841 LVGNKQLDVL VYSWDPQHRH KLCYRGAISL SSILRQSPLH QLALKVEPRG TIYIRMRHTD 900
  901 PLALYKRRGL PSLRAGYPTL FGADLETVVN RESKNAPGSA PVPIVLRRCV EEVERRGLDI 960
  961 IGLYRLCGSA TKKRLLREAF ERNSRAVELT PEHVPDINVI TGVLKDYLRE LPEPLFTRCL1020
 1021 FQMTVDALAV CLPDDPEGNA KLMLSILDCL PRANRATLVF LLDHLSLVVS NSERNKMSAQ1080
 1081 ALATVMGPPL MLHSASAQPG ADIDHAQPIA VLKYLLQIWP QPQAQHQQMA QHMGGAAGAM1140
 1141 MGGLVTAGSM SNMAGVASGN TGRRGESTGQ RGSKVSALPA DRQQLLLQQQ AQLMAAGNLL1200
 1201 RSSTSVTNIL SQGHPQLSAT ANNHLYQSVV GQLAQSHRAL QQAVQQPYQL GGSVGSAIPD1260
 1261 PSPLPLPGTP SPGSSSASTG SGSGSGKSTD TIKRGASPVS VKQVKIVDQP SSPYSIVMKK1320
 1321 PPLQKDAPVE ITTPTTQADT ESTLGCKESN GTASRRGNVD FYDTHKTQAK SVVNEESSYS1380
 1381 SKYTGSETKK IIPGNSSYTP SKANASGLSG GEDYKAMRNK SSATSSSSSS QATVLSAGST1440
 1441 ATSAPTTSSD DSDDLVSYKS SASTNALLAQ SQAMTTSQLM SKYLKREPRV QFTPIKSPES1500
 1501 PSPPGSGDGL PKGTYQLVTP ISGSSSKPGA TTGAISKYTT GSVESSINAN SQKLSSPSRL1560
 1561 CNSKDSNSRT GTASSTTPAT SMVSTGRRLF DSLASSSSSE TETKTYIGGT TAASGAITTT1620
 1621 IYTNDTKNSG SSSSKSGIGG GSGTGLGAVS GASSETRSFG STLFGSSGLG NGNGSSHNHS1680
 1681 SASPSPFTTT NGNGNHNTMH LYGTLPKNGT STGAALFGGS ANSSSYHSSA SGSGAGTASS1740
 1741 SGVSSMTGST NSYDFYTSTS STVSSSRPFA NGGNNYHTLG TYRAQYAATN PFLDAFDEKP1800
 1801 GSNGGNAHGE EKLGADKGHH RAAVMAFQSS GDSKNGSDEY DDIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] deduced N/A No confident structure predictions are available.
    2 View Details [79..341] PSI-BLAST 13.30103 solution structure of the split PH-PDZ Supramodule of alpha-Syntrophin
    3 View Details [342..499] deduced N/A No confident structure predictions are available.
    4 View Details [500..740] deduced N/A No confident structure predictions are available.
    5 View Details [741..880] PSI-BLAST 13.522879 No description for 2j59M was found.
    6 View Details [881..1122] PSI-BLAST 56.522879 Crystal Structure of the Human Beta2-Chimaerin
    7 View Details [1123..1183] deduced N/A No confident structure predictions are available.
    8 View Details [1184..1342] deduced N/A No confident structure predictions are available.
    9 View Details [1343..1429] deduced N/A No confident structure predictions are available.
    10 View Details [1430..1637] MSA 1.206992 View MSA. No confident structure predictions are available.
    11 View Details [1638..1844] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • enzyme regulator activity
    		•  0.68732227880003 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.590837939249671 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.59070509814251 bayes_pls_golite062009
  • enzyme activator activity
    		•  0.53004209819211 bayes_pls_golite062009
  • GTPase activator activity
    		•  0.528693496432149 bayes_pls_golite062009
  • small GTPase regulator activity
    		•  0.10243777232979 bayes_pls_golite062009
  • Ras GTPase activator activity
    		•  0.0454578418356197 bayes_pls_golite062009
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10 No functions predicted.
    11 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle