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Protein Overview: CG12071-PA

General Information:
Name(s) found: CG12071-PA / FBpp0085078 [FlyBase]
Description(s) found:
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  • gi|23172732|gb|AAF57095.2| CG12071, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21358177|ref|NP_651832.1| CG12071, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|16647996|gb|AAL25263.1| GH01388p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG12071 (CG12071, FBgn0039808). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:26702806..26706597. It has the cytological map location 100A6. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: zinc ion binding; nucleic acid binding. There is experimental evidence that it is involved in the biological process</span>: phagocytosis, engulfment. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG12071-PA translation from_gene[CG12071 CG12071 FBgn0039808] seq_release:3 mol_weight=23947 cds_boundaries:(3R:26,694,218..26,694,979[-]) aa_length:217 transcript_info:[CG12071-RA seq_release:3] gene_info:[gene symbol:CG12071 FBgn0039808 gene_boundar [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VA29) CG12071 protein (GH01388p) [DrosMelano7227.FASTAC.txt]
  • CG12071-PA, isoform A [Drosophila melanogaster]gi|16647996|gb|AAL25263.1| GH01388p [Drosophila melanogaster]gi|21358177|ref|NP_651832.1| CG12071-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(26704849..26704964,26705076..26705613); ID=FBpp0085078; name=CG12071-PA; parent=FBgn0039808,FBtr0085716; dbxref=FlyBase:FBpp0085078,FlyBase_Annotation_IDs:CG12071-PA,GB_protein:AAF57095.2,REFSEQ:NP_651832,GB_protein:AAF5709 [fly-100309-contam.fasta]
  • GH01388p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG12071-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(26704849..26704964,26705076..26705613); ID=FBpp0085078; name=CG12071-PA; parent=FBgn0039808,FBtr0085716; dbxref=FlyBase:FBpp0085078,FlyBase_Annotation_IDs:CG12071-PA,GB_protein:AAF57095.2,REFSEQ:NP_651832,GB_protein:AAF57095; MD5=8dbc516d2820976172bfccf5f86e2137; length=217; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(26704849..26704964,26705076..26705613); ID=FBpp0085078; name=CG12071-PA; parent=FBgn0039808,FBtr0085716; dbxref=FlyBase:FBpp0085078,FlyBase_Annotation_IDs:CG12071-PA,GB_protein:AAF57095.2,REFSEQ:NP_651832,GB_protein:AAF57095; MD5=8dbc516d2820976172bfccf5f86e2137; length=217; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG12071, isoform A OS=Drosophila melanogaster GN=CG12071 PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
    • Organism: Drosophila melanogaster
    Length: 217 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: phagocytosis, engulfment [IMP]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKMTVAQKN AYLEAHMAVQ QQMAQAAIQF KQQQTSQQQN SPTANNNNNS QNNGNMQQQQ  60
   61 QQQQQQQQQQ QQQQQQQHYA ATIKVPQISS SNVAAAAAGE STFTVPDDGM GFEGGVRVLQ 120
  121 SLGTWSAAEQ LTYNIPKPNL IPFTEPYVEG GSMHPASRLK ALQQVQQASS GVRKTNPSKS 180
  181 TNKAFECTVC GKGLARKDKL TIHMRIHTGE KPYICEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] PSI-BLAST 64.69897 No description for 2i13A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

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