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Protein Overview: rha-PA

General Information:
Name(s) found: rha-PA / FBpp0084207 [FlyBase]
Description(s) found:
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  • gi|7301332|gb|AAF56461.1| rha [Drosophila melanogaster] [NCBI NR]
  • gi|24650052|ref|NP_651390.2| rha [Drosophila melanogaster] [NCBI NR]
  • The gene rha is referred to in FlyBase by the symbol Dmel\rha (CG11908, FBgn0027376). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:21165974..21170560. It has the cytological map location 96D2. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG11908-PA translation from_gene[CG11908 rha FBgn0027376] seq_release:3 mol_weight=152347 cds_boundaries:(3R:21,156,798..21,161,092[+]) aa_length:1332 transcript_info:[CG11908-RA seq_release:3] gene_info:[gene symbol:rha FBgn0027376 gene_boundaries:(3 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VBR7) RHA protein [DrosMelano7227.FASTAC.txt]
  • (AE003751) rha gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG11908-PA [Drosophila melanogaster]gi|24650052|ref|NP_651390.2| CG11908-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(21166141..21166267,21166325..21166770,21166822..21166893,21166958..21167306,21167371..21170203,21170267..21170438); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG [fly-100309-contam.fasta]
  • CG11908-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • rha CG11908-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(21166141..21166267,21166325..21166770,21166822..21166893,21166958..21167306,21167371..21170203,21170267..21170438); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(21166141..21166267,21166325..21166770,21166822..21166893,21166958..21167306,21167371..21170203,21170267..21170438); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Rha OS=Drosophila melanogaster GN=rha PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(21166141..21166267,21166325..21166770,21166822..21166893,21166958..21167306,21167371..21170203,21170267..21170438); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461,FlyMine:FBpp0084207,modMine:FBpp0084207; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(25340419..25340545,25340603..25341048,25341100..25341171,25341236..25341584,25341649..25344481,25344545..25344716); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461,FlyMine:FBpp0084207,modMine:FBpp0084207; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(25340419..25340545,25340603..25341048,25341100..25341171,25341236..25341584,25341649..25344481,25344545..25344716); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461,FlyMine:FBpp0084207,modMine:FBpp0084207; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Rha OS=Drosophila melanogaster GN=rha PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0084207 type=protein; loc=3R:join(25340419..25340545,25340603..25341048,25341100..25341171,25341236..25341584,25341649..25344481,25344545..25344716); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461,FlyMine:FBpp0084207,modMine:FBpp0084207; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(25340419..25340545,25340603..25341048,25341100..25341171,25341236..25341584,25341649..25344481,25344545..25344716); ID=FBpp0084207; name=rha-PA; parent=FBgn0027376,FBtr0084832; dbxref=FlyBase:FBpp0084207,FlyBase_Annotation_IDs:CG11908-PA,GB_protein:AAF56461.1,REFSEQ:NP_651390,GB_protein:AAF56461,UniProt/TrEMBL:Q9VBR7,FlyMine:FBpp0084207,modMine:FBpp0084207; MD5=bcc01b438b55421a9d03ae9c859620ec; length=1332; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1332 amino acids

    Gene Ontology:
    Cellular Component: chromosome [NAS]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKPSKAPRS MTASGGRSGG RSGSVSSKDS DQVYCVLLHV VEAINFIGRD ATDRQQIVMN  60
   61 AALNSVDFEV EGTQSEETII FNSNCIWECD LAGIKRLKTD HRPVKMTFYA CRGGGAERKT 120
  121 IGTLLLPVRG LPVLGTVGSH NSPHLKMFWH KLICTSSEFR SHKPEVLLML TIIKKSILHT 180
  181 KDFEHFMQFT EVKSPPTPPM QSPGHSITAS MLQSQANVYV QSLVQLGLLQ VGNDPLVDCD 240
  241 IIEVVLQLKQ LRNVTGLVKS LNQGKPPSSV ILVFDFVGNV TNIELKLNES DTYTLNDVLG 300
  301 LRFKTSLRSM RLYFQRIFYL PINMYMNGTA IAHYRMDFTN LLPADDFFSD NRKYTSNGSF 360
  361 SFNRFGRTDS GREPKPPLME YTFSVDLKTI FSRQEQEEPE RTPSIASGNL DSEDEQYLGQ 420
  421 TFCASVVRSR LNLNESEETD EIASNVMKQL ANDSETEVIE MKSNTKNSKH NTSPQRKSQE 480
  481 SKKLIRESSR NTRNSLENLQ NVDELTSLDL FELEEKRQEK IAELERIKAG QSESLLQTEL 540
  541 KVKKHKKADL ELQGKKSQLE TINEVPPKSL RKSKPVSQSE LNNVPKIQEN LPILNNQTKG 600
  601 SRIQKENCEE NNEDLSYALS EEHSSSNEKL DKKPGASKTM RPPEHVDTDL ETDISVFSIQ 660
  661 KKRKSKSKLV ISNELHNFED SSTDTLEKGR PNPSKGDLKL RARWVEVNKV QTQALIETEK 720
  721 FLQKTCPAEL DEVLYEDQVA LGQAKTSKPT KRKVKKPEED KVKRIDYETS YEEEITFCHP 780
  781 EKDPMTMIGE NPINLNDLAS SEEYISISEG NSKPAEIVYT ETEQRVTFVN PKRDREKKKL 840
  841 SSLSKDDLLV EVRSEEYINL RSSARSKTDC VRKKKKISIH EDQVYQAELT PSEEPSSQSE 900
  901 SRGTDNANPI TDQPQVDRVK KKKRDTSGDQ QLFHVEYTSS QKSISKTEGN VKCKELIEPD 960
  961 VEQTDVQVLK KKKLKKTLVT NDTVAQDYET LEEETIKPVK KKIVRKKSSV ILEKIEDTEN1020
 1021 KGPADEVVSV EAKKIIKKKA KPACDNPTVE EYPKTKKGES RKLKSTSKEH FTMEKPSSTI1080
 1081 DSIGQKIKSW RRQQIDLFEQ ELARKEMHYI KQLEQMESQE ARLHQLHKAD TNLDETFISK1140
 1141 IPNVSEVDYE AKFTELEEHI ALLKSEMEEQ VRLFENRSRE LRQENLQLYS EKTELKVRIA1200
 1201 ALEQQIGDLK AQGSDEGDLK EVLGELRSQH YRYNNLAREK ELFRKRWRRS AKRVHALKLA1260
 1261 MYERSLEREH SNIRVEPIDL RKILTKDAEE FEREYGQFRQ NGMSPRYTLN SLSGSGDFAP1320
 1321 PNRKRMVAAH KI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] FFAS03 3.02 No description for 2q3xA was found.
    2 View Details [175..280] deduced N/A No confident structure predictions are available.
    3 View Details [281..671] PSI-BLAST 20.39794 Heavy meromyosin subfragment
    4 View Details [672..852] deduced N/A No confident structure predictions are available.
    5 View Details [853..1021] deduced N/A No confident structure predictions are available.
    6 View Details [1022..1113] deduced N/A No confident structure predictions are available.
    7 View Details [1114..1209] MSA 2.439997 View MSA. No confident structure predictions are available.
    8 View Details [1210..1332] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle