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Protein Overview: CG11920-PA

General Information:
Name(s) found: CG11920-PA / FBpp0084144 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG11920 (CG11920, FBgn0039274). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20900604..20902104. It has the cytological map location 96B20. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: small nuclear ribonucleoprotein complex [ISS]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKQARQRR EYLYNKALTE RLKSKQKIQE TVVKSINENK AIGSKNVKKS LTAYKSLKYA  60
   61 DEGVDDRTVN DEYHYAGCED PKIMLTTSHN PSSRLKMFMK ELRLIIPNAQ QMNRGNYQLT 120
  121 TLMHACRANN VTDFLIVHEH RGIPDSLVVC HLPYGPTAFF NISDVVMRHD IPDIGHMSEQ 180
  181 KPHLIFNNFK TPIGLRTVKI LKHLFPVPKE NSQRVMSFLN HNDSIIFRHH QYKYVNKELE 240
  241 LTEVGPRFSL KLYQIKLGTL ENIKAADTEW INRPYMNTSQ KRLIFSNDPG IINKDTEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] MSA 2.118996 View MSA. Confident ab initio structure predictions are available.
    2 View Details [79..176] PSI-BLAST 16.0 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [177..298] FFAS03 1.71 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.58650371779212 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity
    		•  2.71574082295198 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.73857064375258 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.358563180490135 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle