YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG5720-PA

General Information:
Name(s) found: CG5720-PA / FBpp0084017 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7301144|gb|AAF56277.1| CG5720 [Drosophila melanogaster] [NCBI NR]
  • gi|5901864|gb|AAD55440.1|AF181655_1 BcDNA.LD27873 [Drosophila melanogaster] [NCBI NR]
  • gi|21355215|ref|NP_651243.1| CG5720 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5720 (CG5720, FBgn0028471). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20140382..20144142. It has the cytological map location 95F11-95F12. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: zinc ion binding; nucleic acid binding. There is experimental evidence that it is involved in the biological process</span>: phagocytosis, engulfment. 2 alleles are reported. The phenotypes of these alleles are annotated with: eye; scutellar bristle. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5720-PA translation from_gene[CG5720 BcDNA:LD27873 FBgn0028471] seq_release:3 mol_weight=112971 cds_boundaries:(3R:20,131,354..20,134,635[-]) aa_length:1004 transcript_info:[CG5720-RA seq_release:3] gene_info:[gene symbol:BcDNA:LD27873 FBgn0028471 g [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V3H9) BCDNA:LD27873 protein [DrosMelano7227.FASTAC.txt]
  • (AE003747) BcDNA:LD27873 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5720-PA [Drosophila melanogaster]gi|5901864|gb|AAD55440.1| BcDNA.LD27873 [Drosophila melanogaster]gi|21355215|ref|NP_651243.1| CG5720-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(20140694..20140920,20140982..20141251,20141314..20143563,20143618..20143843,20143937..20143978); ID=FBpp0084017; name=CG5720-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB [fly-100309-contam.fasta]
  • CG5720-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • BcDNA.LD27873 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(20140694..20140920,20140982..20141251,20141314..20143563,20143618..20143843,20143937..20143978); ID=FBpp0084017; name=CG5720-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(20140694..20140920,20140982..20141251,20141314..20143563,20143618..20143843,20143937..20143978); ID=FBpp0084017; name=CG5720-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • BcDNA.LD27873 OS=Drosophila melanogaster GN=BcDNA.LD27873 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(20140694..20140920,20140982..20141251,20141314..20143563,20143618..20143843,20143937..20143978); ID=FBpp0084017; name=Nab2-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277,FlyMine:FBpp0084017,modMine:FBpp0084017; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • BcDNA.LD27873 OS=Drosophila melanogaster GN=BcDNA.LD27873 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:complement(join(24318215..24318256,24317896..24318121,24315592..24317841,24315260..24315529,24314972..24315198)); ID=FBpp0084017; name=Nab2-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277,FlyMine:FBpp0084017,modMine:FBpp0084017; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(24318215..24318256,24317896..24318121,24315592..24317841,24315260..24315529,24314972..24315198)); ID=FBpp0084017; name=Nab2-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277,FlyMine:FBpp0084017,modMine:FBpp0084017; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • BcDNA.LD27873 OS=Drosophila melanogaster GN=Nab2 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0084017 type=protein; loc=3R:complement(join(24318215..24318256,24317896..24318121,24315592..24317841,24315260..24315529,24314972..24315198)); ID=FBpp0084017; name=Nab2-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277,FlyMine:FBpp0084017,modMine:FBpp0084017; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(24318215..24318256,24317896..24318121,24315592..24317841,24315260..24315529,24314972..24315198)); ID=FBpp0084017; name=Nab2-PA; parent=FBgn0028471,FBtr0084633; dbxref=FlyBase:FBpp0084017,FlyBase_Annotation_IDs:CG5720-PA,GB_protein:AAF56277.1,REFSEQ:NP_651243,GB_protein:AAF56277,UniProt/TrEMBL:Q9V3H9,FlyMine:FBpp0084017,modMine:FBpp0084017; MD5=cda00ac42b21eae6a2c4614fccf5406b; length=1004; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1004 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: phagocytosis, engulfment [IMP]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECNLGSEIG QKMRSAVKAK LLELGTGGSA GFIDDELPDY VMVMVANKRT KQQMNAELNL  60
   61 FLGDQTDLFV TWLHEVLQKL QEVTLPTSSA SSKKRKSRGQ EKDKKGSKKD KRPHRKSGDE 120
  121 LSEPQPSSSD AMPIVSSITD VFAEELLEKA KKTMDIDLSA KDEILHKKKN RKSIEDEDAS 180
  181 ANRALDVPAV SEIISTTIGV NRQKDLAELA EIQKKIHAAK KHLRQIGEIG DESDEYDEDL 240
  241 LNLSAREESV DQEPEEDPPK LEAPPRKAKS PIIFNRREKT PEKRPEAEPE IDSRQEEAEE 300
  301 KSPKKDSSAD KAKEDRSERR SVHDRLGSKA QTPADRSQRN QKELYVPTHR RRSEPEATKE 360
  361 RSQRERTRER RSSRDTSRDT NRNQRQRRSP SPEAPSTKQR IVSQVIVAVN KPPEPSDDED 420
  421 MAEKPVNSVI KVKPRPNVSP RRQACKNLLL RAVADAQRST ILAKTSTQKE DEDVGKIISS 480
  481 LGKRKSEDKN DQIRKRNRER KRRKRSAQGN ELFRRTTREL VVNVTQRDGK RERRSNERRA 540
  541 EIKVVEEEYT PSLMTEGVET YVPQLLTNVD ELDLHISSHD EPSPNSGALK TQFVVTLNGD 600
  601 KALGGKNVKG GASRKRPSNS RKRSTSPVST PQVSSSNIEP TSTTVDKRRR SNRDRSFSPS 660
  661 PRQSSGSPSL PTTRSINRNE VRRQPQEIKK IIIKNDTDED DEMHGSPKKR SPNKRQPAAA 720
  721 NGHKDNKDKG KIEEGSTTPP LPAKPKARAE KKASSKEKSV RSNSAETSSA AKSVSASTSV 780
  781 STTTKAKHTP IRFTLKSEDE PSASKKRRSG SPDRDVAAPE RRRVSIRNPE DRKYDNLPAL 840
  841 SAVSVDSTVL KVNKPKERCK YHPNCTKQFC EYYHPTAPCK SFPNCKFADK CMYSHPKCKF 900
  901 DMACMSIDCN YAHGGQRDLS HVQLAAPPLS SHVIPVQNYK SISAPVTSTT ATTMCKYYPN 960
  961 CSKLGCTFYH PKPCRFGKNC VNKLECIFYH PEMQSKFKWV ASLG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] FFAS03 1.14 BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2
    2 View Details [91..602] FFAS03 0.988 Structure of Unphosphorylated STAT1
    3 View Details [603..815] deduced N/A No confident structure predictions are available.
    4 View Details [816..1004] FFAS03 1.48 Crystal structure of the specificity domain of Ribonuclease P RNA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle