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Protein Overview: FBpp0312062, pit...

General Information:
Name(s) found: FBpp0312062 [FlyBase]
pit-PA / FBpp0083573 [FlyBase]
pit-PB / FBpp0083572 [FlyBase]
Description(s) found:
Found 44 descriptions.
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  • type=protein; loc=3R:join(17861557..17861737,17861798..17862019,17862229..17862915,17862974..17863599,17863679..17864005); ID=FBpp0312062; name=pit-PC; parent=FBgn0266581,FBtr0346345; dbxref=FlyBase:FBpp0312062,FlyBase_Annotation_IDs:CG6375-PC; MD5=5f5811599cc1bddcf0acadec426990a8; length=680; release=r5.56; species=Dmel; [FlyBase]
  • The gene pitchoune is referred to in FlyBase by the symbol Dmel\pit (CG6375, FBgn0025140). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:17860020..17864114. It has the cytological map location 94A1. Based on sequence similarity, it is predicted to have molecular function</span>: ATP-dependent RNA helicase activity; RNA helicase activity. The biological processes in which it is involved are not known. 11 alleles are reported. The phenotype of these alleles is annotated with: dorsal mesothoracic disc. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene pitchoune is referred to in FlyBase by the symbol Dmel\pit (CG6375, FBgn0025140). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:17860020..17864114. It has the cytological map location 94A1. Based on sequence similarity, it is predicted to have molecular function</span>: ATP-dependent RNA helicase activity; RNA helicase activity. The biological processes in which it is involved are not known. 11 alleles are reported. The phenotype of these alleles is annotated with: dorsal mesothoracic disc. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 680 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    nucleolus [NAS]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    RNA helicase activity [ISS]
    ATP-dependent RNA helicase activity [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIREKLLMK KIVKREKMKK ELSQKKGNKN AQKQEPPKQN GNKPSKKPEK LSKKHVAKDE  60
   61 DDDLEEDFQE APLPKKKQQK QPPKKQQIQV ANSDSESDDD EQEDEADEDS DLDEVAEVDE 120
  121 EDVDSGSEDD DQQEDEDEEE PVPAKKTKLL PNKSKAQNGK PAKDDEPFTV ESSLAALDYR 180
  181 DSDDRSFASL KGAVSEATLR AIKEMGFTEM TEIQSKSLTP LLKGRDLVGA AQTGSGKTLA 240
  241 FLIPAVELIN KLRFMPRNGT GVIIISPTRE LSMQTFGVLK ELMAHHHHTY GLVMGGSNRQ 300
  301 VESEKLGKGI NILVATPGRL LDHLQNSPDF LYKNLQCLII DEVDRILEIG FEEELKQIIN 360
  361 LLPKRRQTML FSATQTARIE ALSKLALKSE PIYVGVHDNQ DTATVDGLEQ GYIVCPSEKR 420
  421 LLVLFTFLKK NRKKKVMVFF SSCMSVKYHH ELFNYIDLPV TSIHGKQKQT KRTTTFFQFC 480
  481 NAESGILLCT DVAARGLDIP QVDWIVQYDP PDDPREYIHR VGRTARGSGT SGHALLLMRP 540
  541 EELGFLRYLK AAKVPLNEFE FSWQKIADIQ LQLEKLIAKN YFLNQSAKEA FKSYVRAYDS 600
  601 HQLKQIFNVN TLDLQAVAKS FGFLVPPVVD LKVGAAKRER PEKRVGGGGF GFYKKMNEGS 660
  661 ASKQRHFKQV NRDQAKKFMR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] MSA 1.453997 View MSA. No confident structure predictions are available.
    2 View Details [123..560] PSI-BLAST 86.0 No description for 2db3A was found.
    3 View Details [561..680] PSI-BLAST 18.69897 Nucleotide excision repair enzyme UvrB


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle