YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG5621-PA

General Information:
Name(s) found: CG5621-PA / FBpp0083382 [FlyBase]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG5621 (CG5621, FBgn0038840). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16727716..16733987. It has the cytological map location 93A2-93A3. Based on sequence similarity, it is predicted to have molecular function</span>: kainate selective glutamate receptor activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: ion transport. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 822 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: ion transport [IEA]
    Molecular Function: kainate selective glutamate receptor activity [ISS]
    extracellular-glutamate-gated ion channel activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWFVKMISTE ASFPLGFILT SLLLAFPGCR GERTNVGLVY ENTDPDLEKI FHLAISKANE  60
   61 ENEDLQLHGV SVSIEPGNSF ETSKKLCKML RQNLVAVFGP TSNLAARHAM SICDAKELPF 120
  121 LDTRWDFGAQ LPTINLHPHP ATLGVALRDM VVALGWESFT IIYESGEYLP TVRELLQMYG 180
  181 TAGPTVTVRR YELDLNGNYR NVLRRIRNAD DFSFVVVGSM ATLPEFFKQA QQVGLVTSDY 240
  241 RYIIGNLDWH TMDLEPYQHA GTNITGLRLV SPDSEQVQEV AKALYESEEP FQNVSCPLTN 300
  301 SMALVYDGVQ LLAETYKHVN FRPVALSCND DSAWDKGYTL VNYMKSLTLN GLTGPIRFDY 360
  361 EGLRTDFKLE VIELAVSGMQ KIGQWSGEDG FQENRPAPAH SLEPDMRSLV NKSFVVITAI 420
  421 SEPYGMLKET SEKLEGNDQF EGFGIELIDE LSKKLGFSYT WRLQEDNKYG GIDPKTGEWN 480
  481 GMLREIIDSR ADMGITDLTM TSERESGVDF TIPFMSLGIG ILFRKPMKEP PKLFSFMSPF 540
  541 SGEVWLWLGL AYMGVSISMF VLGRLSPAEW DNPYPCIEEP TELENQFSFA NCLWFSIGAL 600
  601 LQQGSELAPK AYSTRAVAAS WWFFTLILVS SYTANLAAFL TVESLVTPIN DADDLSKNKG 660
  661 GVNYGAKIGG ATFNFFKESN YPTYQRMYEF MRDNPQYMTN TNQEGVDRVE NSNYAFLMES 720
  721 TTIEYITERR CTLTQVGALL DEKGYGIAMR KNWPYRDTLS QAVLEMQEQG LLTKMKTKWW 780
  781 QEKRGGGACS VSDQPNLNLW QLVHVWVCAG RGRGLWRRGP GD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..489] PSI-BLAST 36.30103 No description for 2e4uA was found.
    2 View Details [490..579] FFAS03 2.47 Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
    3 View Details [580..822] PSI-BLAST 36.69897 Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle