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Protein Overview: FBpp0308299, Pat...

General Information:
Name(s) found: FBpp0308299 [FlyBase]
Patr-1-PA / FBpp0082833 [FlyBase]
Description(s) found:
Found 25 descriptions.
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  • type=protein; loc=3R:join(12869372..12869410,12869581..12870394,12870625..12872153,12872271..12872516,12872573..12872851); ID=FBpp0308299; name=Patr-1-PB; parent=FBgn0266053,FBtr0339155; dbxref=FlyBase:FBpp0308299,FlyBase_Annotation_IDs:CG5208-PB; MD5=93aebe7e3b799b9593031e8096fb765b; length=968; release=r5.56; species=Dmel; [FlyBase]
  • The gene Protein associated with topo II related - 1 is referred to in FlyBase by the symbol Dmel\Patr-1 (CG5208, FBgn0028470). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:12869290..12873444. It has the cytological map location 89E10. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: cytoplasmic mRNA processing body assembly. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 968 amino acids

    Gene Ontology:
    Cellular Component: cytoplasmic mRNA processing body [IDA]
    Biological Process: cytoplasmic mRNA processing body assembly [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDSFFGFDT NLPDEDGGDG RIVEAEYDAL NDETFGSAIN GDWEEAHETM VRLGGNGERV  60
   61 RKRPAESSGN TDFADQGNGA FLRHANPLSS APSSSGSTPA PLNAPFRQSR HIGDSDLELN 120
  121 ISSMKLDDMD LSSFTTDSEA GGLSNRIKLD SGVWGSQPFP NNQHLFREPM RSAFKPQQQQ 180
  181 HQQHQPQQMK PPQEANANFA LNPQPFPKIT TLEDIERNMI IQQAIPKQQQ QSQQQAERKM 240
  241 FDDFSLGNRQ QVPTPTMLQQ QMLQQQHHQK QQSQQQPPQQ AQHKVPPGFL GTPHTSPPRP 300
  301 NLGFPGPELL PTPSSQQQLN GIGGNRVPPG FIYPQGLPGN IPQLPQHPLM QQHMPHNFPL 360
  361 PGGNQRPLPN PQALPTALNN FAMHPSFNAM RAAGIHPGAF MQPPHPHQML PPRMPPHPLQ 420
  421 AATSLLGQQP PNSMYNMFNM RLVQEIQQNH PLLQQAAVVR QMQQSRAGSV ASDRQRSQAQ 480
  481 QQQQGRRPDG TGNYPLEEYD EYANLMSTRD KHWLIGIQLS QLNTDTPYID DYYYTVFRER 540
  541 KAQQNGQMRN SQAHKDNQLN HPLTQPRGHA QLILVQLGNK NGTRNGHGRE RRNSENTNST 600
  601 SGNTNNGSGG NNNNLTGYIF SPLKFENSLG KLQYGSVTAP RKIIDADIMS GESNAAAEAN 660
  661 ATSSSKSSTP LPTSASHDVN PSSMRKSRHI LLLIETLYRY LLKLEDLESP EVMATIELKK 720
  721 KKEAERIAAL EQLEMANKTP EERAAEAANP QTMNPQLKNK FNYEVETKAA LVNKLKAGLA 780
  781 FDKVIAMMNV RKGKILIRRI MPFIADQSIR WVVWSGVFCS LQTVVKKDKD DVEGVLYALY 840
  841 PEFKKHVNKA TFELLVSISS AITLNDKKLA GIFCSRFGIL SLVALILRAE EIYVSRTDAT 900
  901 LSEENRQKWR EFLAQVASCL NRTIQNQTIS AAIESDAIQP LMDHFERFKD LKLDALLALI 960
  961 TEARHQID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..632] PSI-BLAST 5.69897 No description for 1y0fA was found.
    2 View Details [633..778] deduced N/A No confident structure predictions are available.
    3 View Details [779..968] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle