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Protein Overview: CG6623-PA

General Information:
Name(s) found: CG6623-PA / FBpp0082592 [FlyBase]
Description(s) found:
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  • gi|9979376|sp|Q9VFB7.1|TPC10_DROME RecName: Full=Trafficking protein particle complex subunit 10; AltName: Full=Transport protein particle subunit TMEM1; Short=TRAPP subunit TMEM1; AltName: Full=Trafficking protein particle complex subunit TMEM1 [NCBI NR]
  • gi|7299971|gb|AAF55143.1| CG6623 [Drosophila melanogaster] [NCBI NR]
  • gi|24647017|ref|NP_650431.1| CG6623 [Drosophila melanogaster] [NCBI NR]
  • gi|21428600|gb|AAM49960.1| LD45339p [Drosophila melanogaster] [NCBI NR]
  • Hypothetical protein CG6623 - Drosophila melanogaster (Fruit fly) [Swiss-Prot]
  • Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster GN=SIDL PE=1 SV=1 [Swiss-Prot]
  • Protein TMEM1 homolog - Drosophila melanogaster (Fruit fly) [Swiss-Prot]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6623 (CG6623, FBgn0038303). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:11040471..11044596. It has the cytological map location 88E3. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG6623-PA translation from_gene[CG6623 CG6623 FBgn0038303] seq_release:3 mol_weight=130805 cds_boundaries:(3R:11,040,604..11,044,517[-]) aa_length:1145 transcript_info:[CG6623-RA seq_release:3] gene_info:[gene symbol:CG6623 FBgn0038303 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VFB7) Hypothetical protein CG6623 [DrosMelano7227.FASTAC.txt]
  • (AE003708) CG6623 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG6623-PA [Drosophila melanogaster]gi|21428600|gb|AAM49960.1| LD45339p [Drosophila melanogaster]gi|24647017|ref|NP_650431.1| CG6623-PA [Drosophila melanogaster]gi|9979376|sp|Q9VFB7|Y623_DROME Hypothetical protein CG6623 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(11040583..11040812,11041061..11041403,11041466..11042080,11042140..11044140,11044198..11044421,11044475..11044499); ID=FBpp0082592; name=CG6623-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotati [fly-100309-contam.fasta]
  • CG6623-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD45339p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Hypothetical protein CG6623 [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(11040583..11040812,11041061..11041403,11041466..11042080,11042140..11044140,11044198..11044421,11044475..11044499); ID=FBpp0082592; name=CG6623-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(11040583..11040812,11041061..11041403,11041466..11042080,11042140..11044140,11044198..11044421,11044475..11044499); ID=FBpp0082592; name=CG6623-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster GN=CG6623 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(11040583..11040812,11041061..11041403,11041466..11042080,11042140..11044140,11044198..11044421,11044475..11044499); ID=FBpp0082592; name=SIDL-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143,FlyMine:FBpp0082592,modMine:FBpp0082592; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(join(15218753..15218777,15218476..15218699,15216418..15218418,15215744..15216358,15215339..15215681,15214861..15215090)); ID=FBpp0082592; name=SIDL-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143,FlyMine:FBpp0082592,modMine:FBpp0082592; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(15218753..15218777,15218476..15218699,15216418..15218418,15215744..15216358,15215339..15215681,15214861..15215090)); ID=FBpp0082592; name=SIDL-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143,FlyMine:FBpp0082592,modMine:FBpp0082592; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0082592 type=protein; loc=3R:complement(join(15218753..15218777,15218476..15218699,15216418..15218418,15215744..15216358,15215339..15215681,15214861..15215090)); ID=FBpp0082592; name=SIDL-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143,FlyMine:FBpp0082592,modMine:FBpp0082592; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(15218753..15218777,15218476..15218699,15216418..15218418,15215744..15216358,15215339..15215681,15214861..15215090)); ID=FBpp0082592; name=SIDL-PA; parent=FBgn0038303,FBtr0083138; dbxref=FlyBase:FBpp0082592,FlyBase_Annotation_IDs:CG6623-PA,GB_protein:AAF55143.1,REFSEQ:NP_650431,GB_protein:AAF55143,UniProt/Swiss-Prot:Q9VFB7,FlyMine:FBpp0082592,modMine:FBpp0082592; MD5=14f56cfde28371644da045b349150cf8; length=1145; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1145 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIKPIITYS GSCPLFRSLE SQILNAIPLD TCEWRRTFQR PTKHVRLEAQ AQQFNVAALE  60
   61 KYKQGDWSIL EHPILHIFVT ECNDVDTYKA TIREAIDIWL KTLTSYGVSD WMILLVETLD 120
  121 MRKTKNFMPR TTVLDKIRLD FGTKNDDRCI SVLNPAKFEQ KSTESFRCLV QRIRFLMLTS 180
  181 YNRNIVKYEE LIRSKREKRN IEGWDFRQYF FMQEDLALIF EKLELPTEAL IQYDELDAMF 240
  241 SQFITHTGLN EKQQWLNHFR KPLDAFHGIC LTRADKFEMR NKIRDEGVSL LEFRNYLFER 300
  301 QAYLLLTCND IPEIAKRLLN FLFSTLREVE LIKLECQEGA LCCWEFVCAL EVLQLCEQAM 360
  361 EPNELTCFQH CAPIWNLAKD KLYELGKLCG LLPGCTPTSE QLHIVVQLSS GIGDAPSEQH 420
  421 QFLQATPQLR DRSPNRKPKK SGAEQLKEAL GSNQAFQKLY LELAELAIST YKHVTRLRSA 480
  481 RLVGLDLGNF YCALNEPHKA VGFFTDLLRE LKAENWHMLS SQTLLELANC YRKMGDSLAY 540
  541 TKTCSSISCC AELETLVRTF YFDEFLKSLK TLKTTLSAQP SIENANYCVL EDHFRILDIE 600
  601 VVNQKPIIQD DYILVQLKVE SLYPRGVVAE NVKLCYELEA SSLELAMENV SLTASPSTVK 660
  661 AKDTSSRLKV SLQLVYKQDN RLHSAAVACD LPKSKQPVRR TSSTKRKLSP SVQADFTNFV 720
  721 QAENIALQPG VNLIEMKAKA TRVGCWQFKQ LCISMSSLEF LSEQLPFMPA TFEISTKPAS 780
  781 ATLEFKTLIA GIVQPISLNV SGGSFIFPPD AKITLRCSKN LRIRQARNTD DEAAYNDDQS 840
  841 FESTLQVPLV QFKSFEERRI PLEVLTDMPG RKVSKHHEHH IALNCPWSRT ELPIAVDFQP 900
  901 AMEATCRLHT CGTQKFLQVI MKGMEAHLLL QHAQVKCDVP GVQLLDLNPE SQQPIEIYKS 960
  961 LTVTYLYEIQ VEPLKTEHEL PVVKVHFVIK YASLSQPDVW RTYGCAFDLV DYTTLFKLQA1020
 1021 QLEPNELCRL RTVCNMNLKI TKVHENPYTD LMYEVLNDQN LWAVCGRSAG VVSMKDVDSH1080
 1081 SISLDVMPLS TGFLPMPSIR LSKYTAGGKS KTDGHSKVHP FPPGQVYNST KSMQIHVIAS1140
 1141 VAGDQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] MSA 2.036972 View MSA. No confident structure predictions are available.
    2 View Details [135..202] FFAS03 0.975 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    3 View Details [203..679] FFAS03 1.12 No description for 2gw1A was found.
    4 View Details [680..905] deduced N/A No confident structure predictions are available.
    5 View Details [906..1145] MSA 2.030975 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle