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Protein Overview: CG31278-PA

General Information:
Name(s) found: CG31278-PA / FBpp0081795 [FlyBase]
Description(s) found:
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  • gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster] [NCBI NR]
  • gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster] [NCBI NR]
  • gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG31278 (CG31278, FBgn0051278). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:6533120..6534048. It has the cytological map location 86C4. Based on sequence similarity, it is predicted to have molecular function</span>: peptide deformylase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: translation. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG31278-PA translation from_gene[CG31278 CG31278 FBgn0051278] seq_release:3 mol_weight=27121 cds_boundaries:(3R:6,533,218..6,534,002[-]) aa_length:238 transcript_info:[CG31278-RA seq_release:3] gene_info:[gene symbol:CG31278 synonyms:[CG6482] FBgn0051 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VGY2) CG31278 protein [DrosMelano7227.FASTAC.txt]
  • CG31278-PA [Drosophila melanogaster]gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster]gi|24645726|ref|NP_731494.1| CG31278-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(6533197..6533508,6533580..6533984); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540; M [fly-100309-contam.fasta]
  • RE57173p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG31278-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(6533197..6533508,6533580..6533984); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(6533197..6533508,6533580..6533984); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG31278 OS=Drosophila melanogaster GN=CG31278 PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(6533197..6533508,6533580..6533984); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540,FlyMine:FBpp0081795,modMine:FBpp0081795; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(join(10707858..10708262,10707475..10707786)); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540,FlyMine:FBpp0081795,modMine:FBpp0081795; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(10707858..10708262,10707475..10707786)); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540,FlyMine:FBpp0081795,modMine:FBpp0081795; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Peptide deformylase OS=Drosophila melanogaster GN=CG31278 PE=2 SV=2 [DROME.fasta.20160308]
  • FBpp0081795 type=protein; loc=3R:complement(join(10707858..10708262,10707475..10707786)); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540,FlyMine:FBpp0081795,modMine:FBpp0081795; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(10707858..10708262,10707475..10707786)); ID=FBpp0081795; name=CG31278-PA; parent=FBgn0051278,FBtr0082319; dbxref=FlyBase:FBpp0081795,FlyBase_Annotation_IDs:CG31278-PA,GB_protein:AAF54540.2,REFSEQ:NP_731494,GB_protein:AAF54540,UniProt/TrEMBL:Q9VGY2,FlyMine:FBpp0081795,modMine:FBpp0081795; MD5=754b6db0eb4d92901d22aa884fa52fa0; length=238; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: translation [IEA]
    Molecular Function: iron ion binding [IEA]
    peptide deformylase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLKPRIKVC QAILGHCRSF GTSPPANQSF RKWYQHLWTT ERTNLPPYNH FTQIGDPVLR  60
   61 QQAALVPKEH MASPEIKAIV ERMVKVLRKF DCVGIAAPQI GVSLRIIAME FKGRIRKELP 120
  121 EAVYQARQMS ELPLTIFINP VLTVTNYAKL KHPEGCMSVR GYSAEVERFE GVKLTGLDQL 180
  181 GNQSELALSG WNARIAQHEM DHLEGKLYTD HMDRSTFACT CWEAVNTKSG RVEIPFYK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] PSI-BLAST 52.69897 X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-5000 MME as precipitant


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

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