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Protein Overview: FBpp0306717, CG8...

General Information:
Name(s) found: FBpp0306717 [FlyBase]
CG8273-PA / FBpp0081550 [FlyBase]
Description(s) found:
Found 25 descriptions.
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  • type=protein; loc=3R:join(5403902..5405818,5405878..5406585); ID=FBpp0306717; name=CG8273-PB; parent=FBgn0037716,FBtr0334655; dbxref=FlyBase:FBpp0306717,FlyBase_Annotation_IDs:CG8273-PB,REFSEQ:NP_001262426,GB_protein:AGB95808; MD5=11f230f9e8f35e617a6d749e2a242876; length=874; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG8273 (CG8273, FBgn0037716). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:5403680..5406947. It has the cytological map location 85D25-85D26. Based on sequence similarity, it is predicted to have molecular function</span>: double-stranded RNA binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 874 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: NONE FOUND
    Molecular Function: double-stranded RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENTEKGAS VETPQVAGSQ TNPPVQEPLA LTKIPPIKVK SERPDAEVEA KLRAMNAKIK  60
   61 AEMVTLMRRS NSNELGNNDE SGESESSASA DDKKNIKPVK SSNEILAELF GVFNAAPPEE 120
  121 LLDDNLFKKK KKVKKEKKDK KAKKKKTTKS DGECSDSEAE GKHKHKRKKH KHKDIRVKDK 180
  181 EKDRDRDKSK EKDRDRVTDK SKEKDRDRDR DRDKSKDKFT AAQAPSEKEK EKSESRKRSA 240
  241 VEPSSHSEKR ERHEREKHRD WEREREREKE HERERVRSNN SFYNGQREAD RLKGSESAST 300
  301 KSRQEQDLSD ISLSDEESYL REKASNGRRR AHNSFYDEKE ELSVSPKRNV RESNTRRNRK 360
  361 SRSRSRDLGI DKKRLLEIAR RNAINMFKQG TMPGVANMTA EVKDKVLVKM RYGGRTIQDL 420
  421 TDFCKKISNG DGLSDLSSEE ESDVDKNGNA KVFHHPFQLK EREPIVMHIR NSTALVPAPP 480
  481 RLDEQTKAIT MQFPVSSGQT HRNNEVWVPV DPKDSLVPLP SLPPAKQATN MFKETPKNVF 540
  541 AKSIPLQEQQ EPAFKPLGGA VVVPPLAATQ LPTVPQSVPP TVPKEFAPPA VPFVPEVPIP 600
  601 STSPVTPMQS ASIFPDVTPP SMDVSSIITQ RLSAIRRLQE NPADSEALKM MYTAQRNMSS 660
  661 WANSKHLPGQ FTGSTGAQVM KAHELNSGPQ LWVRKDQMTS TKPVTGGMGM ALLQKMGWKP 720
  721 GEGLGRCKTG SLQPLLLDVK LDKRGLVSRD DLRPPQMRAP AAQRRNKNMA GPIGAGPCPA 780
  781 VQGAGPGPLA STPLVTQDKH PVCVLNELTS KNKWMPPQYK LRQDIGPAHN RSFLFSVEIN 840
  841 GQTFTPDRGS NNKKEAKLNA AALCLRSLGI LPPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..396] PSI-BLAST 16.30103 Heavy meromyosin subfragment
    2 View Details [397..528] deduced N/A No confident structure predictions are available.
    3 View Details [529..600] MSA 3.292996 View MSA. No confident structure predictions are available.
    4 View Details [601..722] deduced N/A No confident structure predictions are available.
    5 View Details [723..874] PSI-BLAST 8.522879 No description for 2b7vA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.602312874472495 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle