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Protein Overview: kat-60L1-PB, kat...

General Information:
Name(s) found: kat-60L1-PC / FBpp0289960 [FlyBase]
kat-60L1-PB / FBpp0078277 [FlyBase]
Description(s) found:
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  • gi|7296674|gb|AAF51954.1| CG1193, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|25009709|gb|AAN71030.1| AT05655p [Drosophila melanogaster] [NCBI NR]
  • gi|24644411|ref|NP_731004.1| CG1193, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene katanin p60-like 1 is referred to in FlyBase by the symbol Dmel\kat-60L1 (CG1193, FBgn0037375). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:1607484..1613187. It has the cytological map location 83C3-83C4. Based on sequence similarity, it is predicted to have molecular function</span>: ATPase activity; microtubule binding. There is experimental evidence that it is involved in the biological process</span>: neuron remodeling. 4 alleles are reported. No phenotypic data is available. It has 8 annotated transcripts and 8 annotated polypeptides. [FlyBase]
  • >CG1193-PB translation from_gene[CG1193 CG1193 FBgn0037375] seq_release:3 mol_weight=73610 cds_boundaries:(3R:1,608,936..1,612,836[+]) aa_length:669 transcript_info:[CG1193-RB seq_release:3] gene_info:[gene symbol:CG1193 FBgn0037375 gene_boundaries:(3R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VNI0) CG1193 protein (AT05655p) [DrosMelano7227.FASTAC.txt]
  • (AE003601) CG1193 gene product [alt 2] [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1193-PB, isoform B [Drosophila melanogaster]gi|24644411|ref|NP_731004.1| CG1193-PB [Drosophila melanogaster]gi|25009709|gb|AAN71030.1| AT05655p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0078277; name=CG1193-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193 [fly-100309-contam.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0289960; name=CG1193-PC; parent=FBgn0037375,FBtr0300736; dbxref=FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC; MD5=b051bc116c8ff [fly-100309-contam.fasta]
  • CG1193-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • AT05655p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0078277; name=CG1193-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0289960; name=CG1193-PC; parent=FBgn0037375,FBtr0300736; dbxref=FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0078277; name=kat-60L1-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0289960; name=kat-60L1-PC; parent=FBgn0037375,FBtr0300736; dbxref=FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • AT05655p OS=Drosophila melanogaster GN=kat-60L1 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0078277; name=kat-60L1-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(1608939..1609252,1610835..1611103,1611164..1611789,1611987..1612461,1612517..1612842); ID=FBpp0289960; name=kat-60L1-PC; parent=FBgn0037375,FBtr0300736; dbxref=REFSEQ:NP_001163521,GB_protein:ACZ94820,FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC,FlyMine:FBpp0289960,modMine:FBpp0289960; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0078277; name=kat-60L1-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0289960; name=kat-60L1-PC; parent=FBgn0037375,FBtr0300736; dbxref=REFSEQ:NP_001163521,GB_protein:ACZ94820,FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC,FlyMine:FBpp0289960,modMine:FBpp0289960; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0078277; name=kat-60L1-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0289960; name=kat-60L1-PC; parent=FBgn0037375,FBtr0300736; dbxref=REFSEQ:NP_001163521,GB_protein:ACZ94820,FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC,FlyMine:FBpp0289960,modMine:FBpp0289960; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q4QPP5, Katanin p60 ATPase-containing subunit A1 OS=Drosophila melanogaster GN=kat-60L1 PE=2 SV=1 [DROME.fasta.20160308]
  • FBpp0078277 type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0078277; name=kat-60L1-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0289960 type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0289960; name=kat-60L1-PC; parent=FBgn0037375,FBtr0300736; dbxref=REFSEQ:NP_001163521,GB_protein:ACZ94820,FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC,FlyMine:FBpp0289960,modMine:FBpp0289960; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0078277; name=kat-60L1-PB; parent=FBgn0037375,FBtr0078628; dbxref=GB_protein:AAF51954.1,FlyBase:FBpp0078277,FlyBase_Annotation_IDs:CG1193-PB,REFSEQ:NP_731004,GB_protein:AAF51954,UniProt/TrEMBL:Q9VNI0; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:join(5783217..5783530,5785113..5785381,5785442..5786067,5786265..5786739,5786795..5787120); ID=FBpp0289960; name=kat-60L1-PC; parent=FBgn0037375,FBtr0300736; dbxref=REFSEQ:NP_001163521,GB_protein:ACZ94820,FlyBase:FBpp0289960,FlyBase_Annotation_IDs:CG1193-PC,UniProt/TrEMBL:Q9VNI0,FlyMine:FBpp0289960,modMine:FBpp0289960; MD5=b051bc116c8ffa370d6f8ab443fdc8e9; length=669; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 669 amino acids

    Gene Ontology:
    Cellular Component: katanin complex [ISS]
    endoplasmic reticulum [ISS]
    microtubule associated complex [ISS]
    Biological Process: microtubule severing [ISS]
    neuron remodeling [IMP]
    microtubule-based process [ISS]
    Molecular Function: ATPase activity [ISS]
    ATP binding [IEA]
    microtubule binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNTSAQNWF GMGQTAVDPS GGVAQLLNNN SSLYNQQQQQ AAAAQHSFMR QRSLTSSNPV  60
   61 LGRSNALATR PQSPPNVQVE YEVAVPFVPT YRHTPYHSLW DLHQCSSTPP TSLSHMARMM 120
  121 DSLILDSLSP FGFTKITATS RPSRNASLKK SSEGGHSSTA ERHRPVNNLG SNAPGGLGIG 180
  181 GSVPLRSKQR LPTQEVAPQP RASQTAQMPF PSQQQDNRWV SSLRRRDPEL QPTLPSINSN 240
  241 ANSSSLSQSH HGSAGNVGLA GAGAPTPAAS MGTMRLGRPA RASAMTAALR KSRSVERLRA 300
  301 RKLSTNTQLN LKHKPVKKNS LDENSNSDDQ DATTSLEDNS HAQSLATSHN TPKCSPKTKA 360
  361 KHFSPLGYEV HLVDTLEKDI LQRHPCIKWT DVAGLNEAKT ILQEAVVLPV IMPEFFKGIR 420
  421 RPWRGVLMVG PPGTGKTMLA KAVATECGTT FFNVSSSTLT SKYRGESEKL VRLLFEMARF 480
  481 YAPSTIFIDE IDALCASRGS DSEHEASRRF KAELLIQMDG LNASMQEEKV IMVLAATNHP 540
  541 WDIDEAFRRR FEKRIYIPLP NEGTRSALLK LCLKDVCLSP SLNTGIIGDE LQGYSGSDIS 600
  601 NVCRDASMMA MRRLISGRTP DQIKQIRREE VDQPITLQDF QDARLRTKKS VSADDVARFE 660
  661 KWMEEYGSC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..669] PSI-BLAST 118.0 VCP/p97


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle