YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: Snr1-PA

General Information:
Name(s) found: Snr1-PA / FBpp0078331 [FlyBase]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • The gene Snf5-related 1 is referred to in FlyBase by the symbol Dmel\Snr1 (CG1064, FBgn0011715). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:1296639..1298476. It has the cytological map location 83A4. There is experimental evidence that it has the molecular function</span>: SET domain binding. There is experimental evidence that it is involved in the biological process</span>: dendrite morphogenesis; imaginal disc-derived wing vein specification; muscle organ development; positive regulation of transcription, DNA-dependent; epidermis development; negative regulation of cell proliferation. 21 alleles are reported. The phenotypes of these alleles are annotated with: wing; tergite; wing vein; wing vein L2. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS][NAS]
    nuclear chromosome [IEA]
    brahma complex [IDA][NAS][TAS]
    Biological Process: muscle organ development [IMP]
    chromatin remodeling [IEA]
    embryonic development via the syncytial blastoderm [NAS]
    positive regulation of transcription, DNA-dependent [IDA]
    negative regulation of cell proliferation [IMP]
    epidermis development [IMP]
    imaginal disc-derived wing vein specification [IMP]
    regulation of transcription [ISS][NAS]
    instar larval or pupal development [NAS]
    dendrite morphogenesis [IMP]
    Molecular Function: RNA polymerase II transcription factor activity [NAS]
    transcription coactivator activity [IC]
    general RNA polymerase II transcription factor activity [ISS]
    SET domain binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQTYGDKP VAFQLEEGGE YYYVGSEVGN YMRHFRGILY KKYPGMTRIV LSNEERKRLA  60
   61 ESGLSSHILA SSVSLLRAVE VDDIMAGNDE KYRAVSVNTS DTPVPRESKS KKQPQYVPTM 120
  121 PNSSHLDAVP QATPINRNRV HTKKVRTFPM CFDDTDPTAS LENAAQKECL VPIRLDMELE 180
  181 GQKLRDTFTW NKNESMITPE QFAEVLCDDL DLNPLPFVPA IAQAIRQQIE AFPNDPPILE 240
  241 ETCDQRVIVK LNIHVGNTSL VDQVEWDMSE KNNNPEEFAI KLCAELGLGG EFVTAIAYSI 300
  301 RGQLSWHCRT YAFSEAPLST IDVPFRNPSD ADAWAPFLET LTDAEMEKKI RDQDRNTRRM 360
  361 RRLANTTTGW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] MSA 1.019979 View MSA. No confident structure predictions are available.
    2 View Details [140..240] MSA 2.038988 View MSA. No confident structure predictions are available.
    3 View Details [241..370] MSA 6.038979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle