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Protein Overview: CG6259-PA, FBpp0...

General Information:
Name(s) found: FBpp0305334 [FlyBase]
CG6259-PA / FBpp0074964 [FlyBase]
Description(s) found:
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  • gi|74948615|sp|Q9VVI9.2|CHMP5_DROME RecName: Full=Charged multivesicular body protein 5 [NCBI NR]
  • gi|21355253|ref|NP_648997.1| CG6259 [Drosophila melanogaster] [NCBI NR]
  • gi|17945552|gb|AAL48828.1| RE24819p [Drosophila melanogaster] [NCBI NR]
  • gi|10727855|gb|AAF49322.2| CG6259 [Drosophila melanogaster] [NCBI NR]
  • Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=Vps60 PE=1 SV=2 [Swiss-Prot]
  • type=protein; loc=3L:complement(17613395..17613457,17613519..17613749,17613829..17613994,17614201..17614352,17614410..17614478); ID=FBpp0305334; name=CG6259-PB; parent=FBgn0036740,FBtr0333123; dbxref=REFSEQ:NP_001261994,GB_protein:AGB94687,FlyBase:FBpp0305334,FlyBase_Annotation_IDs:CG6259-PB; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6259 (CG6259, FBgn0036740). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:17613218..17614598. It has the cytological map location 74E2. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: protein transport. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG6259-PA translation from_gene[CG6259 CG6259 FBgn0036740] seq_release:3 mol_weight=25151 cds_boundaries:(3L:17,569,177..17,570,257[-]) aa_length:226 transcript_info:[CG6259-RA seq_release:3] gene_info:[gene symbol:CG6259 FBgn0036740 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VVI9) CG6259 protein (RE24819p) [DrosMelano7227.FASTAC.txt]
  • (AE003523) CG6259 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG6259-PA [Drosophila melanogaster]gi|17945552|gb|AAL48828.1| RE24819p [Drosophila melanogaster]gi|21355253|ref|NP_648997.1| CG6259-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:complement(17613395..17613457,17613519..17613749,17613829..17613994,17614201..17614352,17614410..17614478); ID=FBpp0074964; name=CG6259-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB [fly-100309-contam.fasta]
  • CG6259-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE24819p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:complement(17613395..17613457,17613519..17613749,17613829..17613994,17614201..17614352,17614410..17614478); ID=FBpp0074964; name=CG6259-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(17613395..17613457,17613519..17613749,17613829..17613994,17614201..17614352,17614410..17614478); ID=FBpp0074964; name=CG6259-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=CG6259 PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:complement(17613395..17613457,17613519..17613749,17613829..17613994,17614201..17614352,17614410..17614478); ID=FBpp0074964; name=CG6259-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322,FlyMine:FBpp0074964,modMine:FBpp0074964; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(17613395..17613457,17613519..17613749,17613829..17613994,17614201..17614352,17614410..17614478); ID=FBpp0305334; name=CG6259-PB; parent=FBgn0036740,FBtr0333123; dbxref=FlyBase:FBpp0305334,FlyBase_Annotation_IDs:CG6259-PB; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0074964; name=Vps60-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322,FlyMine:FBpp0074964,modMine:FBpp0074964; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0305334; name=Vps60-PB; parent=FBgn0036740,FBtr0333123; dbxref=REFSEQ:NP_001261994,GB_protein:AGB94687,FlyBase:FBpp0305334,FlyBase_Annotation_IDs:CG6259-PB; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0074964; name=Vps60-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322,FlyMine:FBpp0074964,modMine:FBpp0074964; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0305334; name=Vps60-PB; parent=FBgn0036740,FBtr0333123; dbxref=REFSEQ:NP_001261994,GB_protein:AGB94687,FlyBase:FBpp0305334,FlyBase_Annotation_IDs:CG6259-PB; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9VVI9, Vacuolar protein sorting 60, isoform B OS=Drosophila melanogaster GN=Vps60 PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0074964 type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0074964; name=Vps60-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322,FlyMine:FBpp0074964,modMine:FBpp0074964; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0305334 type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0305334; name=Vps60-PB; parent=FBgn0036740,FBtr0333123; dbxref=REFSEQ:NP_001261994,GB_protein:AGB94687,FlyBase:FBpp0305334,FlyBase_Annotation_IDs:CG6259-PB; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0074964; name=Vps60-PA; parent=FBgn0036740,FBtr0075201; dbxref=FlyBase:FBpp0074964,FlyBase_Annotation_IDs:CG6259-PA,GB_protein:AAF49322.2,REFSEQ:NP_648997,GB_protein:AAF49322,UniProt/Swiss-Prot:Q9VVI9,FlyMine:FBpp0074964,modMine:FBpp0074964; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:complement(join(17621310..17621378,17621101..17621252,17620729..17620894,17620419..17620649,17620295..17620357)); ID=FBpp0305334; name=Vps60-PB; parent=FBgn0036740,FBtr0333123; dbxref=REFSEQ:NP_001261994,GB_protein:AGB94687,FlyBase:FBpp0305334,FlyBase_Annotation_IDs:CG6259-PB,UniProt/Swiss-Prot:Q9VVI9; MD5=69dc6fde1a03d57ae20dc94c14d9a526; length=226; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein transport [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLFGRGKP KEPGPSLNDC IAGVDARATN IEEKISNLEA ELRKYREQMS KMREGPAKNS  60
   61 VKQKALRVLK QKKAYEQQAE SLRNQSFNME QANYAAQSLK DTQATVAAMK DGVKQMKTEY 120
  121 KKINIDQIED IQDDMADMFE QADEVQEALG RTYGMPEVDD DDLQAELDAL GDEIALDDDT 180
  181 SYLDDVVKAP EAPSREPGAD SIVPGKSTIE TDEFGLPKIP TSLKTT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 19.0 No description for 2gd5A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle