YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: scf-PB

General Information:
Name(s) found: scf-PB / FBpp0088880 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|23092750|gb|AAN11468.1| supercoiling factor, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|17137604|ref|NP_477393.1| supercoiling factor, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene supercoiling factor is referred to in FlyBase by the symbol Dmel\scf (CG9148, FBgn0025682). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:1298618..1300389. It has the cytological map location 61F5. Based on sequence similarity, it is predicted to have molecular function</span>: DNA topoisomerase activity. There is experimental evidence that it is involved in the biological process</span>: chromatin organization; dosage compensation, by hyperactivation of X chromosome. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG9148-PB translation from_gene[CG9148 scf FBgn0025682] seq_release:3 mol_weight=22325 cds_boundaries:(3L:1,279,766..1,280,459[+]) aa_length:192 transcript_info:[CG9148-RB seq_release:3] gene_info:[gene symbol:scf FBgn0025682 gene_boundaries:(3L:1,279 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8IRH7) CG9148-PB [DrosMelano7227.FASTAC.txt]
  • (AE003471) scf gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG9148-PB, isoform B [Drosophila melanogaster]gi|17137604|ref|NP_477393.1| CG9148-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468; MD5=4b11b7fc [fly-100309-contam.fasta]
  • CG9148-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • supercoiling factor CG9148-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Supercoiling factor, isoform B OS=Drosophila melanogaster GN=scf PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468,FlyMine:FBpp0088880,modMine:FBpp0088880; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Supercoiling factor variant B OS=Drosophila melanogaster GN=scf PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468,FlyMine:FBpp0088880,modMine:FBpp0088880; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468,FlyMine:FBpp0088880,modMine:FBpp0088880; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9W0H8, Supercoiling factor variant B OS=Drosophila melanogaster GN=scf PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0088880 type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468,FlyMine:FBpp0088880,modMine:FBpp0088880; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:join(1299137..1299200,1299319..1299833); ID=FBpp0088880; name=scf-PB; parent=FBgn0025682,FBtr0089941; dbxref=FlyBase:FBpp0088880,FlyBase_Annotation_IDs:CG9148-PB,GB_protein:AAN11468.1,REFSEQ:NP_477393,GB_protein:AAN11468,UniProt/TrEMBL:Q8IRH7,FlyMine:FBpp0088880,modMine:FBpp0088880; MD5=4b11b7fc8bfe692cf49f307e25686659; length=192; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 192 amino acids

    Gene Ontology:
    Cellular Component: polytene chromosome [IDA]
    Biological Process: dosage compensation, by hyperactivation of X chromosome [IMP]
    chromatin organization [IMP]
    Molecular Function: calcium ion binding [IEA]
    DNA topoisomerase activity [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTVYGFMDD LSPDEKEQEE NGVSYKSLLK RDRYRWSVAD QDLDDNLTKD EFTAFLHPED  60
   61 HPSMKGVVLR ETITDLDKDH DGKISVDEYI GDMYRSTGAE DEEPEWVANE REAFSTHRDL 120
  121 DKDGYLNEEE VKQWIAPHDF DHSEAEAKHL LFEADADHDD KLTKEEILDK YDVFVGSQAT 180
  181 DFGEALARHD EF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 27.39794 Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle