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Protein Overview: scf-PB

General Information:
Name(s) found: scf-PB / FBpp0088880 [FlyBase]
Description(s) found:
Found 21 descriptions.
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  • The gene supercoiling factor is referred to in FlyBase by the symbol Dmel\scf (CG9148, FBgn0025682). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:1298618..1300389. It has the cytological map location 61F5. Based on sequence similarity, it is predicted to have molecular function</span>: DNA topoisomerase activity. There is experimental evidence that it is involved in the biological process</span>: chromatin organization; dosage compensation, by hyperactivation of X chromosome. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 192 amino acids

    Gene Ontology:
    Cellular Component: polytene chromosome [IDA]
    Biological Process: dosage compensation, by hyperactivation of X chromosome [IMP]
    chromatin organization [IMP]
    Molecular Function: calcium ion binding [IEA]
    DNA topoisomerase activity [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTVYGFMDD LSPDEKEQEE NGVSYKSLLK RDRYRWSVAD QDLDDNLTKD EFTAFLHPED  60
   61 HPSMKGVVLR ETITDLDKDH DGKISVDEYI GDMYRSTGAE DEEPEWVANE REAFSTHRDL 120
  121 DKDGYLNEEE VKQWIAPHDF DHSEAEAKHL LFEADADHDD KLTKEEILDK YDVFVGSQAT 180
  181 DFGEALARHD EF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 27.39794 Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle