Protein Overview: scf-PA

General Information:
Name(s) found:	scf-PA / FBpp0088881 [FlyBase]
Description(s) found: SHOW ONLY BEST	gi\|90855605\|gb\|ABE01164.1\| IP16409p [Drosophila melanogaster] [NCBI NR] gi\|45552855\|ref\|NP_995953.1\| supercoiling factor, isoform C [Drosophila melanogaster] [NCBI NR] gi\|45445729\|gb\|AAS64929.1\| supercoiling factor, isoform C [Drosophila melanogaster] [NCBI NR] gi\|23092749\|gb\|AAF47468.2\| supercoiling factor, isoform A [Drosophila melanogaster] [NCBI NR] gi\|17944544\|gb\|AAL48160.1\| RH25118p [Drosophila melanogaster] [NCBI NR] gi\|17137602\|ref\|NP_477392.1\| supercoiling factor, isoform A [Drosophila melanogaster] [NCBI NR] The gene supercoiling factor is referred to in FlyBase by the symbol Dmel\scf (CG9148, FBgn0025682). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:1298618..1300389. It has the cytological map location 61F5. Based on sequence similarity, it is predicted to have molecular function</span>: DNA topoisomerase activity. There is experimental evidence that it is involved in the biological process</span>: chromatin organization; dosage compensation, by hyperactivation of X chromosome. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase] >CG9148-PA translation from_gene[CG9148 scf FBgn0025682] seq_release:3 mol_weight=37993 cds_boundaries:(3L:1,279,355..1,280,459[+]) aa_length:329 transcript_info:[CG9148-RA seq_release:3] gene_info:[gene symbol:scf FBgn0025682 gene_boundaries:(3L:1,279 [hmr_yeast5_DM3-1_pombe.fasta] (Q9W0H8) CG9148 protein (RH25118p) [DrosMelano7227.FASTAC.txt] CG9148-PC, isoform C [Drosophila melanogaster]gi\|23092749\|gb\|AAF47468.2\| CG9148-PA, isoform A [Drosophila melanogaster]gi\|17944544\|gb\|AAL48160.1\| RH25118p [Drosophila melanogaster]gi\|45552855\|ref\|NP_995953.1\| CG9148-PC [Drosophila melanogaster]gi\|1713 [nrdb_11152004_Chlamydomonas] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088879; name=scf-PC; parent=FBgn0025682,FBtr0089940; dbxref=GB_protein:AAS64929.1,FlyBase:FBpp0088879,FlyBase_Annotation_IDs:CG9148-PC,REFSEQ:NP_995953,GB_protein:AAS64929; MD5=6ee7efdb [fly-100309-contam.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468; MD5=6ee7efdb [fly-100309-contam.fasta] CG9148-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta] CG9148-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta] supercoiling factor CG9148-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta] RH25118p [Drosophila melanogaster] [nr-271106-contam.fasta] supercoiling factor CG9148-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta] IP16409p [Drosophila melanogaster] [nr-271106-contam.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088879; name=scf-PC; parent=FBgn0025682,FBtr0089940; dbxref=GB_protein:AAS64929.1,FlyBase:FBpp0088879,FlyBase_Annotation_IDs:CG9148-PC,REFSEQ:NP_995953,GB_protein:AAS64929; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088879; name=scf-PC; parent=FBgn0025682,FBtr0089940; dbxref=GB_protein:AAS64929.1,FlyBase:FBpp0088879,FlyBase_Annotation_IDs:CG9148-PC,REFSEQ:NP_995953,GB_protein:AAS64929; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta] IP16409p OS=Drosophila melanogaster GN=scf PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468,FlyMine:FBpp0088881,modMine:FBpp0088881; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468,FlyMine:FBpp0088881,modMine:FBpp0088881; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468,FlyMine:FBpp0088881,modMine:FBpp0088881; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r6.07; species=Dmel; [fly-08202015-contam.fasta] IP16409p OS=Drosophila melanogaster GN=scf PE=1 SV=2 [DROME.fasta.20160308] FBpp0088881 type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468,FlyMine:FBpp0088881,modMine:FBpp0088881; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta] [fly-122215-dmel-6-09-contam.fasta] type=protein; loc=3L:join(1298726..1299200,1299319..1299833); ID=FBpp0088881; name=scf-PA; parent=FBgn0025682,FBtr0089942; dbxref=FlyBase:FBpp0088881,FlyBase_Annotation_IDs:CG9148-PA,GB_protein:AAF47468.2,REFSEQ:NP_477392,GB_protein:AAF47468,UniProt/TrEMBL:Q9W0H8,FlyMine:FBpp0088881,modMine:FBpp0088881; MD5=6ee7efdbfff24cdb0d157ae9d7d8b6f9; length=329; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
Organism:	Drosophila melanogaster
Length:	329 amino acids
Gene Ontology:
Cellular Component:	polytene chromosome [IDA]
Biological Process:	dosage compensation, by hyperactivation of X chromosome [IMP] chromatin organization [IMP]
Molecular Function:	calcium ion binding [IEA] DNA topoisomerase activity [ISS][NAS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTRIQMLL LVVALTAVIS GASASSIPEE LPHNPLEHDP LHPRHFDGGE HNAQFDHEAF  60
   61 LGPDESKKFD SLTPEESRRR LGVIVDRIDE NKDGSVTLAE LKNWIAYTQR RYIEEDVGRV 120
  121 WKQHNPDNNE TISWDSYMQT VYGFMDDLSP DEKEQEENGV SYKSLLKRDR YRWSVADQDL 180
  181 DDNLTKDEFT AFLHPEDHPS MKGVVLRETI TDLDKDHDGK ISVDEYIGDM YRSTGAEDEE 240
  241 PEWVANEREA FSTHRDLDKD GYLNEEEVKQ WIAPHDFDHS EAEAKHLLFE ADADHDDKLT 300
  301 KEEILDKYDV FVGSQATDFG EALARHDEF

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein Overview: scf-PA

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: