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Protein Overview: Tudor-SN-PA, FBp...

General Information:
Name(s) found: FBpp0304417 [FlyBase]
Tudor-SN-PA / FBpp0072419 [FlyBase]
Description(s) found:
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  • gi|7291949|gb|AAF47366.1| Tudor-SN [Drosophila melanogaster] [NCBI NR]
  • gi|27819982|gb|AAO25027.1| LD20211p [Drosophila melanogaster] [NCBI NR]
  • gi|20130403|ref|NP_612021.1| Tudor-SN [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3L:complement(259503..259913,260311..261746,261978..262818,264118..264210); ID=FBpp0304417; name=Tudor-SN-PB; parent=FBgn0035121,FBtr0332107; dbxref=FlyBase:FBpp0304417,FlyBase_Annotation_IDs:CG7008-PB,REFSEQ:NP_001261195,GB_protein:AGB93890; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r5.56; species=Dmel; [FlyBase]
  • The gene Tudor-SN is referred to in FlyBase by the symbol Dmel\Tudor-SN (CG7008, FBgn0035121). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:259286..264378. It has the cytological map location 61B3. Based on sequence similarity, it is predicted to have molecular function</span>: transcription coactivator activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: RNA interference. 14 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG7008-PA translation from_gene[CG7008 CG7008 FBgn0035121] seq_release:3 mol_weight=103101 cds_boundaries:(3L:240,136..244,840[-]) aa_length:926 transcript_info:[CG7008-RA seq_release:3] gene_info:[gene symbol:CG7008 FBgn0035121 gene_boundaries:(3L:23 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W0S7) CG7008 protein (LD20211p) [DrosMelano7227.FASTAC.txt]
  • (AE003467) CG7008 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG7008-PA [Drosophila melanogaster]gi|27819982|gb|AAO25027.1| LD20211p [Drosophila melanogaster]gi|20130403|ref|NP_612021.1| CG7008-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:complement(259503..259913,260311..261746,261978..262818,264118..264210); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612 [fly-100309-contam.fasta]
  • CG7008-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD20211p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Tudor-SN CG7008-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:complement(259503..259913,260311..261746,261978..262818,264118..264210); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(259503..259913,260311..261746,261978..262818,264118..264210); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD20211p OS=Drosophila melanogaster GN=Tudor-SN PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:complement(259503..259913,260311..261746,261978..262818,264118..264210); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366,FlyMine:FBpp0072419,modMine:FBpp0072419; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(259503..259913,260311..261746,261978..262818,264118..264210); ID=FBpp0304417; name=Tudor-SN-PB; parent=FBgn0035121,FBtr0332107; dbxref=FlyBase:FBpp0304417,FlyBase_Annotation_IDs:CG7008-PB; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366,FlyMine:FBpp0072419,modMine:FBpp0072419; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0304417; name=Tudor-SN-PB; parent=FBgn0035121,FBtr0332107; dbxref=FlyBase:FBpp0304417,FlyBase_Annotation_IDs:CG7008-PB,REFSEQ:NP_001261195,GB_protein:AGB93890; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366,FlyMine:FBpp0072419,modMine:FBpp0072419; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0304417; name=Tudor-SN-PB; parent=FBgn0035121,FBtr0332107; dbxref=FlyBase:FBpp0304417,FlyBase_Annotation_IDs:CG7008-PB,REFSEQ:NP_001261195,GB_protein:AGB93890; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0072419 type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366,FlyMine:FBpp0072419,modMine:FBpp0072419; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0304417 type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0304417; name=Tudor-SN-PB; parent=FBgn0035121,FBtr0332107; dbxref=FlyBase:FBpp0304417,FlyBase_Annotation_IDs:CG7008-PB,REFSEQ:NP_001261195,GB_protein:AGB93890; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0072419; name=Tudor-SN-PA; parent=FBgn0035121,FBtr0072519; dbxref=FlyBase:FBpp0072419,FlyBase_Annotation_IDs:CG7008-PA,GB_protein:AAF47366.1,REFSEQ:NP_612021,GB_protein:AAF47366,UniProt/TrEMBL:Q9W0S7,FlyMine:FBpp0072419,modMine:FBpp0072419; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:complement(join(264118..264210,261978..262818,260311..261746,259503..259913)); ID=FBpp0304417; name=Tudor-SN-PB; parent=FBgn0035121,FBtr0332107; dbxref=FlyBase:FBpp0304417,FlyBase_Annotation_IDs:CG7008-PB,REFSEQ:NP_001261195,GB_protein:AGB93890,UniProt/TrEMBL:Q9W0S7; MD5=701c9a369d3a19fef028cdbc20f725df; length=926; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 926 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    RNA-induced silencing complex [IEA][TAS]
    Biological Process: RNA interference [IEA]
    Molecular Function: hydrolase activity, acting on ester bonds [IEA]
    nucleic acid binding [IEA]
    transcription coactivator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAANTATA AGAAKDAPPA PTKSLSGIVK QVLSGDTVVI RATKGAPPPE KQITFSHVLA  60
   61 PKLARRPGAG GDETKDEPWA WESREFLRKK LIGVEVTFTF DKPANSNREY GFVWIGKDKE 120
  121 TGENVVESIV REGLVSVRRE GRPTAEQQTL IELEDQARAA GRGKWSPTAS AADKVRNIKW 180
  181 SHENPAHLVD IYGGNPVKAI IEHVRDGSTV RAFLLPDFHY ITLMISGIRC PGVKLDADGK 240
  241 PDLSVKVPFA DEARYYVETR LLQRDVEIRL ESVNNSNFIG TILYPKGNIA ESLLREGLAK 300
  301 CVDWSMAVMK TGTDKLRAAE RFAKEKRLRQ WQDYQAKTPA FNSKEKDFSG TVVEVFNGDA 360
  361 INVRLSNGQV KKVFFSSIRP PRDQRAVVGT DGEEIVKAPP RGKNYRPLYE IPHMFDAREF 420
  421 LRKKLINKKV QCNLDYISPP RENFPEKYCY TVSIGGQNVA EAMVAKGLAT CVRYRQDDDQ 480
  481 RSSAYDQLIA AEQQAIKGLK GLHAKKDNAT LRVNDLTVDH SRIKVQYLPS WQRALRTEAI 540
  541 VEFVASGSRL RIFVPKDSCL VTFLLAGISC PRSSRPALNG VPAQEGEPFG DEALTFTRER 600
  601 VLQRDVSVHI DTTDKAGSSV IGWLWTDSGA NLSVALVEEG LAEVHFSAEK SEYYRQLKIA 660
  661 EDRAKAAKKN IWTNYVEEVP KEKTVTEEEK EDKVVAERKV NYENVIVTEI TETLTFFAQS 720
  721 VESGSKLESL MSKLHADFQS NPPIAGSYTP KRGDLVAAQF TLDNQWYRAK VERVQGSNAT 780
  781 VLYIDYGNKE TLPTNRLAAL PPAFSSEKPY ATEYALALVA LPTDNEDKEE ALRAFSEDVL 840
  841 NHKVQLNVEL KVTGSPNLAT LRDPTTKVDF GKQLVAEGLV LAEQRGERKL KELVDQYKAA 900
  901 QEAARVAHLA IWKYGDITQD DAPEFR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle