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Protein Overview: FBpp0297274, CG4...

General Information:
Name(s) found: FBpp0297274 [FlyBase]
CG4612-PA / FBpp0072253 [FlyBase]
Description(s) found:
Found 29 descriptions.
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  • type=protein; loc=2R:complement(20411841..20412065,20412297..20412995); ID=FBpp0297274; name=CG4612-PC; parent=FBgn0035016,FBtr0306137; dbxref=REFSEQ:NP_001246493,GB_protein:AFH08246,FlyBase:FBpp0297274,FlyBase_Annotation_IDs:CG4612-PC; MD5=1bd9a6a8c15f505b569c615e13068198; length=307; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG4612 (CG4612, FBgn0035016). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20411207..20413617. It has the cytological map location 60D3-60D4. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding; poly(A) RNA binding. The biological processes in which it is involved are not known. 3 alleles are reported. The phenotype of these alleles is annotated with: wing. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 307 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    poly(A) RNA binding [ISS]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVNSMTFRG NPANYHQQQP ALNHHTLAAA HHQQQLHHHA AAAGHLSHVG GGHAASNHLA  60
   61 AAAVLGRHGH NSLGSGHTST SSHSANVGVG VGGGALASGS TGGSGGNSSP DSGKIYIKNL 120
  121 ERSIDNKAVY DTFSVFGNIL NCNVAKDEDG NSRGYGFVHF DSEEAARAAI EKVNGMLCNN 180
  181 QKVHVVKFIP RRDREQEKAT HFKNLYVKNL SEEFTEQHLR EMFEPYGRIT SHKLMLDEEG 240
  241 RSRRFGFVAY ENPQSALAAV IGLHGKQLGD NKFLYVARAL SKAERQQEIN RKLEERKRQK 300
  301 AGQIFYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] deduced N/A No confident structure predictions are available.
    2 View Details [99..307] PSI-BLAST 37.0 Poly(A)-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle