YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RYBP-PA, FBpp0311610

General Information:
Name(s) found: FBpp0311610 [FlyBase]
RYBP-PA / FBpp0071779 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|21645629|gb|AAF46885.2| CG12190 [Drosophila melanogaster] [NCBI NR]
  • gi|19922764|ref|NP_611705.1| CG12190 [Drosophila melanogaster] [NCBI NR]
  • gi|17862256|gb|AAL39605.1| LD18758p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2R:join(18558612..18558750,18559135..18559448); ID=FBpp0311610; name=RYBP-PB; parent=FBgn0034763,FBtr0345500; dbxref=FlyBase:FBpp0311610,FlyBase_Annotation_IDs:CG12190-PB; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ring and YY1 Binding Protein is referred to in FlyBase by the symbol Dmel\RYBP (CG12190, FBgn0034763). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:18558257..18560717. It has the cytological map location 58F7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: zinc ion binding. The biological processes in which it is involved are not known. 11 alleles are reported. The phenotypes of these alleles are annotated with 14 unique terms, many of which group under: adult segment; adult mesothoracic segment; organ system; thoracic segment; wing hair; integumentary plate; adult metathoracic segment; adult external prothorax; peripheral nervous system; adult prothoracic segment; nervous system. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG12190-PA translation from_gene[CG12190 CG12190 FBgn0034763] seq_release:3 mol_weight=16855 cds_boundaries:(2R:17,714,657..17,715,490[+]) aa_length:150 transcript_info:[CG12190-RA seq_release:3] gene_info:[gene symbol:CG12190 FBgn0034763 gene_boundar [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W215) CG12190 protein (LD18758p) [DrosMelano7227.FASTAC.txt]
  • CG12190-PA [Drosophila melanogaster]gi|17862256|gb|AAL39605.1| LD18758p [Drosophila melanogaster]gi|19922764|ref|NP_611705.1| CG12190-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(18558612..18558750,18559135..18559448); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885; MD5=20 [fly-100309-contam.fasta]
  • CG12190-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD18758p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(18558612..18558750,18559135..18559448); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(18558612..18558750,18559135..18559448); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD18758p OS=Drosophila melanogaster GN=RYBP PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(18558612..18558750,18559135..18559448); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885,FlyMine:FBpp0071779,modMine:FBpp0071779; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • LD18758p OS=Drosophila melanogaster GN=RYBP PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885,FlyMine:FBpp0071779,modMine:FBpp0071779; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0311610; name=RYBP-PB; parent=FBgn0034763,FBtr0345500; dbxref=FlyBase:FBpp0311610,FlyBase_Annotation_IDs:CG12190-PB,GB_protein:AHN56537,REFSEQ:NP_001286742; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885,FlyMine:FBpp0071779,modMine:FBpp0071779; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0311610; name=RYBP-PB; parent=FBgn0034763,FBtr0345500; dbxref=FlyBase:FBpp0311610,FlyBase_Annotation_IDs:CG12190-PB,GB_protein:AHN56537,REFSEQ:NP_001286742; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0071779 type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885,FlyMine:FBpp0071779,modMine:FBpp0071779; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0311610 type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0311610; name=RYBP-PB; parent=FBgn0034763,FBtr0345500; dbxref=FlyBase:FBpp0311610,FlyBase_Annotation_IDs:CG12190-PB,GB_protein:AHN56537,REFSEQ:NP_001286742; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0071779; name=RYBP-PA; parent=FBgn0034763,FBtr0071868; dbxref=FlyBase:FBpp0071779,FlyBase_Annotation_IDs:CG12190-PA,GB_protein:AAF46885.2,REFSEQ:NP_611705,GB_protein:AAF46885,UniProt/TrEMBL:Q9W215,FlyMine:FBpp0071779,modMine:FBpp0071779; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(22671107..22671245,22671630..22671943); ID=FBpp0311610; name=RYBP-PB; parent=FBgn0034763,FBtr0345500; dbxref=FlyBase:FBpp0311610,FlyBase_Annotation_IDs:CG12190-PB,GB_protein:AHN56537,REFSEQ:NP_001286742,UniProt/TrEMBL:Q9W215; MD5=206fcb550a08d2ced2b0bb94024e4708; length=150; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 150 amino acids

    Gene Ontology:
    Cellular Component: nuclear body [IDA]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKSSPVRR QKRQAKVIEE NFWDCSVCTY RNSAEAFKCR MCDVRKGTST RKPRLNSALV  60
   61 AQQAATLPGA SVNMPNGKSA SGSRHGSGHD RQRHKRYPAR LKNVDRSTAQ TREVTVNSVT 120
  121 VFITEYKAKP VSSRRESSEQ SFSESNDSRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle