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Protein Overview: FBpp0308233

General Information:
Name(s) found: FBpp0308233 [FlyBase]
Description(s) found:
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  • gi|24656813|ref|NP_726040.1| glycogenin, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21645190|gb|AAF46696.3| glycogenin, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21464356|gb|AAM51981.1| RE02181p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2R:join(17088157..17088163,17092118..17092428,17092515..17092804,17092866..17093046,17095975..17096187); ID=FBpp0308233; name=Glycogenin-PB; parent=FBgn0265191,FBtr0339088; dbxref=FlyBase:FBpp0308233,FlyBase_Annotation_IDs:CG44244-PB; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r5.56; species=Dmel; [FlyBase]
  • The gene Glycogenin is referred to in FlyBase by the symbol Dmel\Glycogenin (CG9480, FBgn0034603). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:17087979..17100474. It has the cytological map location 57D1. Based on sequence similarity, it is predicted to have molecular function</span>: glycogenin glucosyltransferase activity. There is experimental evidence that it is involved in the biological process</span>: mesoderm development. 7 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG9480-PB translation from_gene[CG9480 Glycogenin FBgn0034603] seq_release:3 mol_weight=37776 cds_boundaries:(2R:16,244,203..16,252,230[+]) aa_length:333 transcript_info:[CG9480-RB seq_release:3] gene_info:[gene symbol:Glycogenin FBgn0034603 gene_boun [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W2J6) CG9480 protein (RE02181p) [DrosMelano7227.FASTAC.txt]
  • CG9480-PB, isoform B [Drosophila melanogaster]gi|21464356|gb|AAM51981.1| RE02181p [Drosophila melanogaster]gi|24656813|ref|NP_726040.1| CG9480-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(17088157..17088163,17092118..17092428,17092515..17092804,17092866..17093046,17095975..17096187); ID=FBpp0088557; name=Glycogenin-PB; parent=FBgn0034603,FBtr0089601; dbxref=FlyBase:FBpp0088557,FlyBase_Annotation_IDs:CG9480-PB,GB_p [fly-100309-contam.fasta]
  • CG9480-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE02181p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Glycogenin CG9480-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(17088157..17088163,17092118..17092428,17092515..17092804,17092866..17093046,17095975..17096187); ID=FBpp0088557; name=Glycogenin-PB; parent=FBgn0034603,FBtr0089601; dbxref=FlyBase:FBpp0088557,FlyBase_Annotation_IDs:CG9480-PB,GB_protein:AAF46696.3,REFSEQ:NP_726040,GB_protein:AAF46696; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(17088157..17088163,17092118..17092428,17092515..17092804,17092866..17093046,17095975..17096187); ID=FBpp0088557; name=Glycogenin-PB; parent=FBgn0034603,FBtr0089601; dbxref=FlyBase:FBpp0088557,FlyBase_Annotation_IDs:CG9480-PB,GB_protein:AAF46696.3,REFSEQ:NP_726040,GB_protein:AAF46696; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Glycogenin, isoform B OS=Drosophila melanogaster GN=Glycogenin PE=1 SV=3 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(17088157..17088163,17092118..17092428,17092515..17092804,17092866..17093046,17095975..17096187); ID=FBpp0088557; name=Glycogenin-PB; parent=FBgn0034603,FBtr0089601; dbxref=FlyBase:FBpp0088557,FlyBase_Annotation_IDs:CG9480-PB,GB_protein:AAF46696.3,REFSEQ:NP_726040,GB_protein:AAF46696,FlyMine:FBpp0088557,modMine:FBpp0088557; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Glycogenin, isoform B OS=Drosophila melanogaster GN=Glycogenin PE=2 SV=3 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:join(21200652..21200658,21204613..21204923,21205010..21205299,21205361..21205541,21208470..21208682); ID=FBpp0308233; name=Glycogenin-PB; parent=FBgn0265191,FBtr0339088; dbxref=FlyBase:FBpp0308233,FlyBase_Annotation_IDs:CG44244-PB,GB_protein:AAF46696,REFSEQ:NP_726040; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(21200652..21200658,21204613..21204923,21205010..21205299,21205361..21205541,21208470..21208682); ID=FBpp0308233; name=Glycogenin-PB; parent=FBgn0265191,FBtr0339088; dbxref=FlyBase:FBpp0308233,FlyBase_Annotation_IDs:CG44244-PB,GB_protein:AAF46696,REFSEQ:NP_726040; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0B4LFW5, Glycogenin, isoform B OS=Drosophila melanogaster GN=Glycogenin PE=1 SV=3 [DROME.fasta.20160308]
  • FBpp0308233 type=protein; loc=2R:join(21200652..21200658,21204613..21204923,21205010..21205299,21205361..21205541,21208470..21208682); ID=FBpp0308233; name=Glycogenin-PB; parent=FBgn0265191,FBtr0339088; dbxref=FlyBase:FBpp0308233,FlyBase_Annotation_IDs:CG44244-PB,GB_protein:AAF46696,REFSEQ:NP_726040; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(21200652..21200658,21204613..21204923,21205010..21205299,21205361..21205541,21208470..21208682); ID=FBpp0308233; name=Glycogenin-PB; parent=FBgn0265191,FBtr0339088; dbxref=FlyBase:FBpp0308233,FlyBase_Annotation_IDs:CG44244-PB,GB_protein:AAF46696,REFSEQ:NP_726040,UniProt/TrEMBL:Q9W2J6; MD5=c86de26c5d75d3ac8d325439140ca351; length=333; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 333 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: mesoderm development [IEP]
    Molecular Function: glycogenin glucosyltransferase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFAWVTLT TNDTYSLGAL VLAHSLKRAK TAHQLAVLVT PNVSQAMRDR LKEVYNVVQE  60
   61 VNVLDSQDAA NLALLSRPEL GVTFTKLHCW RLVQFEKCVF LDADTLVLQN CDELFEREEL 120
  121 SAAPDVSWPD CFNSGVFVFK PSVDTFAQIT EFAVKNGSFD GGDQGLLNQF FADWSTADIK 180
  181 KHLPFVYNVT AYASYCYLPA FKQFRDKIKI LHFAGKLKPW LIQFNSETKV ASVSSEYAHA 240
  241 QDLIQLWWNI FCENVIQSLS TEMAGLAGAL SQLRIGQQRT PEQEAYENQM RRQCWESGQI 300
  301 DYTGADSFEN IWKKISQTLE RKTDKESEET GSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..333] PSI-BLAST 85.39794 apo form of a mutant of glycogenin in which Asp159 is replaced by Asn

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring hexosyl groups
    		•  2.70047942699289 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  2.33861720107822 bayes_pls_golite062009
  • transferase activity
    		•  2.17535315350752 bayes_pls_golite062009
  • catalytic activity
    		•  1.88676710996045 bayes_pls_golite062009
  • acetylgalactosaminyltransferase activity
    		•  1.33788133706753 bayes_pls_golite062009
  • uridylyltransferase activity
    		•  1.27888067902271 bayes_pls_golite062009
  • cytidylyltransferase activity
    		•  1.14240569193314 bayes_pls_golite062009
  • polypeptide N-acetylgalactosaminyltransferase activity
    		•  1.10309252319727 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.03393419806381 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.02084820914491 bayes_pls_golite062009
  • glycogenin glucosyltransferase activity
    		•  0.968757748180341 bayes_pls_golite062009
  • mannosyltransferase activity
    		•  0.91123217364068 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.897978517422275 bayes_pls_golite062009
  • UDP-N-acetylglucosamine diphosphorylase activity
    		•  0.513376694534047 bayes_pls_golite062009
  • mannose-phosphate guanylyltransferase activity
    		•  0.2363835251362 bayes_pls_golite062009
  • guanylyltransferase activity
    		•  0.0539392112504681 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.54

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle