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Protein Overview: Obp56b-PA

General Information:
Name(s) found: Obp56b-PA / FBpp0085675 [FlyBase]
Description(s) found:
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  • gi|24655939|ref|NP_611443.1| Odorant-binding protein 56b [Drosophila melanogaster] [NCBI NR]
  • gi|21626949|gb|AAM68426.1| Odorant-binding protein 56b [Drosophila melanogaster] [NCBI NR]
  • The gene Odorant-binding protein 56b is referred to in FlyBase by the symbol Dmel\Obp56b (CG30129, FBgn0046880). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:15586347..15586822. It has the cytological map location 56E2. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG30129-PA translation from_gene[CG30129 Obp56b FBgn0046880] seq_release:3 mol_weight=14828 cds_boundaries:(2R:14,762,565..14,763,037[-]) aa_length:137 transcript_info:[CG30129-RA seq_release:3] gene_info:[gene symbol:Obp56b synonyms:[CG15129] FLAGGED [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8MLI9) CG30129-PA [DrosMelano7227.FASTAC.txt]
  • CG30129-PA [Drosophila melanogaster]gi|24655939|ref|NP_611443.1| CG30129-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(15586347..15586700,15586763..15586822); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426 [fly-100309-contam.fasta]
  • Odorant-binding protein 56b CG30129-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG30129-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(15586347..15586700,15586763..15586822); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(15586347..15586700,15586763..15586822); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Odorant-binding protein 56b OS=Drosophila melanogaster GN=Obp56b PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(15586347..15586700,15586763..15586822); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426,FlyMine:FBpp0085675,modMine:FBpp0085675; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(19699258..19699317,19698842..19699195)); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426,FlyMine:FBpp0085675,modMine:FBpp0085675; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(19699258..19699317,19698842..19699195)); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426,FlyMine:FBpp0085675,modMine:FBpp0085675; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0085675 type=protein; loc=2R:complement(join(19699258..19699317,19698842..19699195)); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426,FlyMine:FBpp0085675,modMine:FBpp0085675; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(19699258..19699317,19698842..19699195)); ID=FBpp0085675; name=Obp56b-PA; parent=FBgn0046880,FBtr0086480; dbxref=FlyBase:FBpp0085675,FlyBase_Annotation_IDs:CG30129-PA,GB_protein:AAM68426.1,REFSEQ:NP_611443,GB_protein:AAM68426,UniProt/TrEMBL:A1ZBP7,FlyMine:FBpp0085675,modMine:FBpp0085675; MD5=d3c4c706baf501b2116e1f20c39cf225; length=137; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 137 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN][ISS]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIYLLVVF LIFALSELVA GQSAAELAAY KQIQQACIKE LNIAASDANL LTTDKEVANP  60
   61 SESVKCYHSC VYKKLGLLGD DGKPNTDKIV KLAQIRFSSL PVDKLKSLLT SCGTTKSAAT 120
  121 CDFVYNYEKC VVKGISA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..137] PSI-BLAST 20.522879 AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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