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Protein Overview: CG6550-PA

General Information:
Name(s) found: CG6550-PA / FBpp0086116 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG6550 (CG6550, FBgn0034214). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:13313168..13314984. It has the cytological map location 54B7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: 4 iron, 4 sulfur cluster binding; catalytic activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: RNA modification. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 552 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [IEA][ND]
    Biological Process: RNA modification [IEA]
    Molecular Function: catalytic activity [IEA]
    4 iron, 4 sulfur cluster binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHLGQDLPG NDVDDIEDLI SADDVKPRER YENKKTVTVR AKKRSQIRLE SQEEEEKPKP  60
   61 TIHESVIPGT QKVFVKTWGC AHNNSDSEYM AGQLAAYGYR LSGKEEADLW LLNSCTVKNP 120
  121 SEDTFRNEIE SGMRNGKHVV VAGCVPQGAP KSDYLNGLSV IGVQQIDRVV EVVEETLKGH 180
  181 SVQLLQNKKK VHGRRVAGAP LSLPKVRKNP LIEIISINSG CLNQCTYCKT KHARGDLASY 240
  241 PPEEVVERAR QSFAEGCCEI WLTSEDTGAY GRDIGSSLPE LLWQLVEVIP EHCMLRVGMT 300
  301 NPPYILEHLE EVANVLQHPR VYSFLHVPVQ SGSDSVLGEM KREYCRQDFE HVVDFLRERV 360
  361 PGVTIATDII CGFPTETEDD FEETMTLCAK YRFPSLFINQ FFPRPGTPAA KMDRIPANLV 420
  421 KKRTKRLTDL FYSYEPYADR VGEIYTVLVT EVSHDKLHYV GHNKSYEQVL LPMRDNLLGT 480
  481 RVHVRITSAS KFSMVGEILD DERDWTRCAK NQELPNVQVQ TRSRERLIQR YFGIALVLGS 540
  541 LAFLIQLVVR LL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] FFAS03 0.968 Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
    2 View Details [200..552] PSI-BLAST 60.0 No description for 2qgqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.31391544670091 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  1.12687320369727 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  0.961709183630333 bayes_pls_golite062009
  • binding
    		•  0.880117216098541 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  0.848226595871555 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.793846453693773 bayes_pls_golite062009
  • protein binding
    		•  0.0998292353431207 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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