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Protein Overview: Rcd1-PB

General Information:
Name(s) found: Rcd1-PB / FBpp0086709 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • The gene Reduction in Cnn dots 1 is referred to in FlyBase by the symbol Dmel\Rcd1 (CG8233, FBgn0033897). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10035763..10040624. It has the cytological map location 50E1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: centriole replication. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1066 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: centriole replication [IMP]
    Molecular Function: hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKESGSVSKN QPQTSEARGS IITYSPSKFL TSVGTGRTTY STHTHTTTAT SAATTATKTN  60
   61 NLPMGGSSAA YYVVKAGSLG SAASMSGCIK VSSPPKGPPM AKSPALVVTS PCTPTESSST 120
  121 ISAPSESSFS EKMEHSYMRD TPVRSDVHNG LTPARNILVR HPPQCPSCHT YPPQHEELSE 180
  181 IQQAHVPPYD EVVAKEAMNE CARIAKYVKN NNSDEQDWVA RVNKFNWTPM QEMVFEKVCS 240
  241 ILDQDQLARL ANDKRQHEPI HRRISSDKSA SRFRKLLASV AWESRITQWI HALLMEHLSP 300
  301 SYMASYLEIL QTLKTKLPTL VDKMLFGRPL NNSQELLAPV MKKRWEPNIM PKSRQLTHNA 360
  361 IMVVLPNMPT TGTVSDRMQK WYQALSTITQ VVQISLPNTN NRIGNQNLDH VAETIVSITR 420
  421 VKINELRTEN PSRGIILVGF NAGAALALQV ALSESVACVV CMGFAYNTIR GPRGTPDDRM 480
  481 LDIKAPILFV IGQNSARTSQ EEMEGLRERM QSESSLVVVG SADDALRVPK SKRRIEGVTQ 540
  541 SMVDYMVVEE IFEFVNRTLS NPPGPRMPTC LMHQQGYQRL PKQSPHILAD GNANKAVQQM 600
  601 RKRKMDGGLD DSMGQPSKTK FVPHNDAQDY GDAQTTAGGS ASLPKVITPG VLGKQLPPVN 660
  661 LAAGTKIKMI PSSQFVQIKS LPSQSKLINY TLNKPSVGTS STANIGSVVK TLPCSSVSGQ 720
  721 QIITLKTPSG QTQQFATAAT STGAAGSSTS TGTGQKKYTV FKNANGMTML HLTKSVPTTG 780
  781 SSSGSANMDL SNIIDMPIVF ADNEGNIPEH QQADKDIKPA PIRSANKSPL IISQKIIKEA 840
  841 NKPSGMVTSG SITAVSKPGN IVLNKGLQQL LNSSPGGTLA TQNKVVYLNR STIKPMGNVA 900
  901 PGTHRVPIRI VSTPNTGGAV TTTASSSPIM VDPATGSKVA KTVNVQTIKP TGSVLAQGTI 960
  961 RQAGNVGTKS YLQMINTAPG ASKTVAGDGK GSVRNIYFKS ATGLKQLPVQ MLGNRIPGGA1020
 1021 VISSTASASS GSPGLRRVVN IGPVSKVTAT STTSSSIAAT LTHNKM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] deduced N/A No confident structure predictions are available.
    2 View Details [143..342] MSA 1.026924 View MSA. No confident structure predictions are available.
    3 View Details [343..527] PSI-BLAST 16.69897 No description for 2fukA was found.
    4 View Details [528..1066] PSI-BLAST 18.69897 No description for 1y0fB was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • catalytic activity
    		•  1.22413317508498 bayes_pls_golite062009
  • hydrolase activity
    		•  0.977307957851981 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle